Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08330 106 / 1e-29 unknown protein AT2G17705 38 / 0.0005 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G178000 [exp] 177 / 1e-57 AT4G08330 138 / 3e-42 unknown protein Potri.005G070600 [exp] 92 / 5e-24 AT4G08330 105 / 3e-29 unknown protein Potri.014G197000 [exp] 75 / 1e-17 AT4G08330 113 / 4e-33 unknown protein Potri.005G107700 [exp] 39 / 0.0002 AT2G17705 197 / 9e-67 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025667 [exp] 128 / 8e-38 AT4G08330 166 / 5e-53 unknown protein Lus10018170 [exp] 124 / 2e-36 AT4G08330 163 / 6e-52 unknown protein Lus10025950 [exp] 38 / 0.001 AT2G17705 202 / 2e-68 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G083600.1 pacid=42777364 polypeptide=Potri.002G083600.1.p locus=Potri.002G083600 ID=Potri.002G083600.1.v4.1 annot-version=v4.1 ATGGAAAAATCTAAGGTTGGCAAGGGAGCTTACCTCAACGGGAATCCCCATCATTCCTTCTCTTCTTCCTCTGCTTCTCAAAGACATGTCAGCTACAGCT GCGGTATTTGCGGGTATGAATTGAACTTGAGCTCCTCCAATCGGAACACCTCATCTATTGGCTCTAAATATGGGAAATCCATAAAGAGAGGGATCATCTC ATTCTTCTTCATCGATGAGAGCAGATTTACCCAGGTTGATGAATTCCAATGCATTCCCTTCTTTTCAAGAAACTCCTGGGGTTTGTTCCACCGGAGAACA GCACTTCTTTGCCGCAAGTGTGGTAATAATATTGGAATTGCTTATGATGATAAAGCCTCAGCTTATCCACTTGTAGCAGACGGATCTGACTCTTCCTCAG TCAGTGAAGTTTCCAAACATCGAAAATATGATGTTAAAATCCGTGCCTTGCAGCCTTCTTCTGTTGACCAGTTTAGCACTCCAATTCACACCTGA
AA sequence Show only first row Show all	>Potri.002G083600.1 pacid=42777364 polypeptide=Potri.002G083600.1.p locus=Potri.002G083600 ID=Potri.002G083600.1.v4.1 annot-version=v4.1 MEKSKVGKGAYLNGNPHHSFSSSSASQRHVSYSCGICGYELNLSSSNRNTSSIGSKYGKSIKRGIISFFFIDESRFTQVDEFQCIPFFSRNSWGLFHRRT ALLCRKCGNNIGIAYDDKASAYPLVADGSDSSSVSEVSKHRKYDVKIRALQPSSVDQFSTPIHT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08330			unknown protein		Potri.002G083600 [exp]	0	1
AT2G29700		ATPH1	pleckstrin homologue 1 (.1)		Potri.001G250400 [exp]	3.16	0.6783	Pt-ATPH1.2
AT4G30820			cyclin-dependent kinase-activa...		Potri.018G103200 [exp]	3.74	0.6845
AT3G07500	FAR1_related		Far-red impaired responsive (F...		Potri.014G176500 [exp]	3.87	0.6755
AT5G10700			Peptidyl-tRNA hydrolase II (PT...		Potri.018G008000 [exp]	9.53	0.6524
AT1G47056		VFB1	VIER F-box proteine 1 (.1)		Potri.002G123100 [exp]	11.22	0.6424
AT2G40830		RHC1A	RING-H2 finger C1A (.1.2.3)		Potri.006G032100 [exp]	12.48	0.6751	RHC1.2
AT1G09815		POLD4	polymerase delta 4 (.1)		Potri.019G042900 [exp]	18.00	0.6536
AT5G60390			GTP binding Elongation factor ...		Potri.006G130900 [exp]	18.76	0.6536
AT3G56680			Single-stranded nucleic acid b...		Potri.006G034700 [exp]	20.00	0.6625
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Potri.016G017500 [exp]	20.78	0.6481

Compare expression of checked genes

Potri.002G083600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.