Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26430 405 / 8e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G67830 382 / 8e-132 ATFXG1 Arabidopsis thaliana alpha-fucosidase 1, alpha-fucosidase 1 (.1) AT5G14450 381 / 4e-131 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G27950 317 / 3e-106 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G54790 317 / 4e-106 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) AT3G05180 283 / 1e-92 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G01130 278 / 9e-91 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G56670 259 / 2e-83 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G09390 258 / 6e-83 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G62280 241 / 1e-76 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G083700 [exp] 767 / 0 AT3G26430 417 / 3e-145 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G177700 [exp] 582 / 0 AT3G26430 407 / 2e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G074400 [exp] 540 / 0 AT3G26430 388 / 8e-134 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G185500 [exp] 455 / 3e-160 AT3G26430 534 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G047900 [exp] 442 / 5e-155 AT3G26430 504 / 1e-179 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G342600 [exp] 362 / 8e-124 AT5G14450 595 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G026300 [exp] 320 / 2e-107 AT1G54790 605 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Potri.005G038800 [exp] 319 / 9e-107 AT1G54790 595 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Potri.002G216000 [exp] 281 / 6e-92 AT1G54790 474 / 1e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032094 [exp] 352 / 1e-119 AT5G14450 578 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10014592 [exp] 346 / 2e-117 AT5G14450 573 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003021 [exp] 326 / 2e-109 AT3G26430 385 / 4e-133 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10006224 [exp] 329 / 4e-106 AT3G26430 342 / 5e-111 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029980 [exp] 316 / 2e-105 AT1G54790 578 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10008784 [exp] 304 / 7e-101 AT3G27950 391 / 2e-135 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011051 [exp] 290 / 1e-95 AT3G26430 340 / 1e-115 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029638 [exp] 291 / 2e-95 AT1G54790 443 / 2e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10029639 [exp] 285 / 2e-93 AT1G54790 421 / 4e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10036873 [exp] 276 / 6e-91 AT3G26430 275 / 1e-90 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.002G083800.1 pacid=42777352 polypeptide=Potri.002G083800.1.p locus=Potri.002G083800 ID=Potri.002G083800.1.v4.1 annot-version=v4.1 ATGGGGTTTACTAGTATTAAAGTGTCTTTTATCACTTTGGGTTATTTTCTTATGTTGTTTGTAACTCTCACCAGCATCTTGAATCCCATCTTTGCTTCGA GAATCTGCGAGTTTCCAGCAATATTTAACTTGGGCGATTCAAACTCTGATACTGGTACACTGTCAGCTGCCTTCACTGCCCTTAACTCTCCCTATGGAGA CACTTACTTTCACATGCCCGCGGGAAGGTTCTCAGATGGAAGGCTGATCATAGATTTCATTGCAAAGAGTTTCAATCTACCATATCTCAGTGCTTATCTT AATTCTCTGGGCGCCAGCTACACAAATGGGGCGAATTTTGCCTCAGCAAGAGCCACCATCAGATTTCCGTCTCCAATTATACCTGCTAGTGGTGGATATA GTCCATTCTACCTTGATGTGCAATATCAGCAATTTATGCAATTTAAAGACAGATCACAGATCATTAGGAAACAAGGAGGAAAGTTTGCCAAGTTGATGCC TAAGGAGGACTATTTCCGAAAAGCACTATACACATTTGACATTGGTCATAATGATCTTGGAGCTGGAATTTTCAGCAACATGTCCATTGAGGAAGTGAAA GCAACTGTCCCTGATATTGTCAACAGGTTTTCGATATATGTTAAGAATATATACGAAGTGGGAGGCAGATCGTTTTGGATTCATAGCACAGGGCCAATTG GTTGTCTTGCTTACATCTTGACCGGCTTCCCTTCAGCAGAGAAGGACAGTGCTGGCTGTTCAAAGCAGCACAATGAAGTGGCTCGGTATTTTAATTACAA ATTGAAGGAGGCTGTTTTTAAATTGAGGAAAGATTTTCCTTCAGCTGCGATCACATACGTGGACGTGTATTCTGTGAAATATTCTTTATTCAGTGATCCC AAGAAATATGGATTTGAGCTTCCACTTATAACCTGCTGTGGCTATGGAGGCAAGTACAACTACAGTGATGCTGCAGGATGTGGAGAAACAATTACAGTAA ATAATACCAAAATGGTTGTCGGTTCATGTGACAACCCCTCTGTTCGAGTAAATTGGGACGGAGCCCACTATACCGAGGCTGCTAACAAGTTTGTTTTCGA TCGAATTTCGACAGGAGCCTTTTCTGATCCGCCAATCCCCTTAAACATGGCATGCCACAGGAATGTATAA
AA sequence Show only first row Show all	>Potri.002G083800.1 pacid=42777352 polypeptide=Potri.002G083800.1.p locus=Potri.002G083800 ID=Potri.002G083800.1.v4.1 annot-version=v4.1 MGFTSIKVSFITLGYFLMLFVTLTSILNPIFASRICEFPAIFNLGDSNSDTGTLSAAFTALNSPYGDTYFHMPAGRFSDGRLIIDFIAKSFNLPYLSAYL NSLGASYTNGANFASARATIRFPSPIIPASGGYSPFYLDVQYQQFMQFKDRSQIIRKQGGKFAKLMPKEDYFRKALYTFDIGHNDLGAGIFSNMSIEEVK ATVPDIVNRFSIYVKNIYEVGGRSFWIHSTGPIGCLAYILTGFPSAEKDSAGCSKQHNEVARYFNYKLKEAVFKLRKDFPSAAITYVDVYSVKYSLFSDP KKYGFELPLITCCGYGGKYNYSDAAGCGETITVNNTKMVVGSCDNPSVRVNWDGAHYTEAANKFVFDRISTGAFSDPPIPLNMACHRNV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Potri.002G083800 [exp]	0	1
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.009G064900 [exp]	9.05	0.9711
					Potri.018G082700 [exp]	11.78	0.9818
AT4G03500			Ankyrin repeat family protein ...		Potri.011G133400 [exp]	12.24	0.9744
AT1G16260			Wall-associated kinase family ...		Potri.003G185688 [exp]	17.02	0.9794
AT2G13810		EDTS5, ALD1	eds two suppressor 5, AGD2-lik...		Potri.002G091500 [exp]	21.56	0.9791
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Potri.013G041900 [exp]	25.29	0.9781
AT1G49780		PUB26	plant U-box 26 (.1)		Potri.005G063700 [exp]	25.33	0.9388
AT2G39210			Major facilitator superfamily ...		Potri.006G122400 [exp]	28.46	0.9778
AT5G65300			unknown protein		Potri.005G072000 [exp]	28.84	0.9399
AT1G30890			Integral membrane HRF1 family ...		Potri.001G327700 [exp]	41.95	0.9775

Compare expression of checked genes

Potri.002G083800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.