Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77600 1130 / 0 ARM repeat superfamily protein (.1.2.3) AT5G47690 571 / 2e-177 binding (.1.2.3) AT4G31880 122 / 9e-28 unknown protein AT1G80810 119 / 3e-27 Tudor/PWWP/MBT superfamily protein (.1.2) AT1G15940 112 / 8e-25 Tudor/PWWP/MBT superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G005400 [exp] 599 / 0 AT5G47690 1698 / 0.0 binding (.1.2.3) Potri.006G004750 [exp] 577 / 8e-179 AT5G47690 1681 / 0.0 binding (.1.2.3) Potri.006G263300 [exp] 133 / 3e-31 AT4G31880 424 / 8e-133 unknown protein Potri.018G020400 [exp] 129 / 6e-30 AT4G31880 389 / 3e-120 unknown protein Potri.001G046500 [exp] 118 / 2e-26 AT4G31880 267 / 1e-76 unknown protein Potri.018G109600 [exp] 100 / 5e-21 AT4G31880 180 / 3e-47 unknown protein Potri.003G181300 [exp] 100 / 6e-21 AT1G80810 231 / 3e-64 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.006G186700 [exp] 96 / 1e-19 AT4G31880 167 / 8e-43 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025655 [exp] 1135 / 0 AT1G77600 899 / 0.0 ARM repeat superfamily protein (.1.2.3) Lus10018180 [exp] 1088 / 0 AT1G77600 864 / 0.0 ARM repeat superfamily protein (.1.2.3) Lus10039082 [exp] 562 / 9e-174 AT5G47690 1661 / 0.0 binding (.1.2.3) Lus10038777 [exp] 506 / 4e-153 AT5G47690 1579 / 0.0 binding (.1.2.3) Lus10017121 [exp] 141 / 1e-33 AT4G31880 473 / 2e-152 unknown protein Lus10018332 [exp] 140 / 3e-33 AT4G31880 464 / 2e-149 unknown protein Lus10002307 [exp] 80 / 5e-15 AT4G31880 214 / 4e-61 unknown protein Lus10026078 [exp] 73 / 8e-13 AT4G31880 228 / 1e-66 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G084300.2 pacid=42778957 polypeptide=Potri.002G084300.2.p locus=Potri.002G084300 ID=Potri.002G084300.2.v4.1 annot-version=v4.1 ATGGACGAATCTCCGCTTCAACTCGTTTCCGAAATCGGCGACCATCTCGGTCGACACGCTCGGCCCAACAAGGACTTCCTTGTCAAATCGCTCCGTCAAG CTGCAAATGCTTTGTCACAAATTGAACAGCCTTTGGAAACTTTTAAAAAGGCAGAAGCTACAAAGAAGTTAGAAGCTGCTATAAAGCCCCTGAGGAAGTC TATTCTGAAGCACTATCTTATTAAGCATACTGACAAAGAAGTCAAACTTTTGGTGGCAATCTGTGTCAGTGAAGTGTTTCGGGTCTTGGCACCGGAGCCT CCTTTCGAGGACAAATATCTGAGGGATATATTTATACTTTTTCTCAACATGTTCAAGGAGCTCAGTGATACTGCTAGCCCACACTTTCTGAGGAGAGTTA AAGTATTGGAAACTGTGGCACGTTGTAAATGTTGTGTGATCATGCTGGATGTTGACTGCCACGATCTTGTTCTTGAAATGTTCAAAATTTTTTTCTCTTC TGTGAGGGAACATCACCAGCAGTCTTTGATTGATGAGATTCTGTCTATAATGAAACATGTTTTAAACGAGGAGGCTTCTCAAGCACTTTTGGATGTGATT TTGCTGAATCTTATAAAGGAAGGAAAGGCTGCAACTCCTGCTGCATCTCAGCTTGCTGCATCTGTCATCCAAACTTGTGAAGAAAAGCTTGAACCATTTG TTTGTGGGTTTTTAACATCTTGTTTCTTAGACAGAGATGCTGTTGAGAGTGAGCTTAAGGAATTTTACCACGAAATCCTTTTTAAAGTTTTCCAGTGTGC TCCTCATATGCTTCTTGGTGTCATCCCCAACTTGACTCAAGAGTTACTGACAGATCAGGTTGATGTCCGAATAAAAGCTGTTAATTTAATTGGAAAGCTC TTGGCACTACCCGAGCATCATGCTGTACAGAAATATCAGAGTCTTTTTGTAGAGTTCAAAAATAGATTCTCTGATAAATCAGCAGAAGTTAGACTTAGTG TTTTGCAGTGTGCTAAAGCATGCTACATAGCCAATCCCTCTGGGAATGTATCACGTGAAATACTTACTGTTCTTGAAGGTCGATTGCTGGACTTTGATGA TAGAGTGCGAACACAGGCTGCTGTTGTTGCCTGTGATCTTGCCAGGACTAACCTGAGGTTTTTTCCACCCGAACTAATATCAAAAGTTTCTGAAAGACTT CGGGATAAGAAGATATCTGTCAGAAAGAAGGCTTTGGAGAAGTTGATGGAGGTATATCGAGATTATTGTATCATGTGTTCTGAAGGCCTCATGACAGCAA GTGATCACTTTGAACAGATTCCTTGTAAAGTCTTGATGCTTTCCTATGATAAAGATTGTAAGGATTTCAGGCCCCAAAACATGGAGCTTGTTATTGCAGA GGATTTATTTCCTGTCTTTCTTCCTGTCGAGGAAAGGACAAGGCACTGGATCCAATTGTTCTCTCTTTTCACTTCTTCTCACGTGAAGGCACTGATATCT ATATTATCTCAGAAGGGAAGGCTGCAGACTGAAATGCAAATTTATTTGGCACAACGGAAGAAAGAGAAGGACAGCAGTTCAGAAGAAATGGAGAGGAGAA TAAAAAATTCATTTGTGAAAATGTCAGCATCCTTTCCAGATCCTTTGAAGGCAGAAGAGTGCTTCCATAAATTGAACCAGATGAAAGATAGCAAGATTTT CATTGCACTGGAGCAATTATTGGATGATCGAACAATTAAAAGTGCCCAGCAAACTAGAGATAAATTTCTGAAAATGATAGGAGACAAGCATCCACATTTT GAGTTTCTACAATTACTCTCCTCAAAATGCTCATTTAACATATTCAGCTCAGAGCATGTTCAATGTATTTTAGATCATATCTCCAGCAGTGGTTTTGAAC AACATCTCAAGGCCTCTGCTAAATTGCTTCTGGCTATTATCAGTGTTTACCCCTCTTTTATGCGGGGTTTGGAAGAGCAGTTTCAATTGCTGTTAGAAGA AAACAATTCAATTAATGATACGCTGGTTGAAGTCTTGGCCAAAGCAGGCCCTCATATTAAAGCCAAATTCAGCGAGTTTTATCCATTGTTGGAGAGAATA TGCCTCAAGGGAACTCGTTTTCAGTCGAAGCATGCTGTTTCTGCAATTGCTTCATTGGTTGGTTCTTCTGATGAGTTCATTTTCTCAAAACTTTGCAAGG AACTTGTGGATTCTCTATATAGTGGGCTGAACACCCCAACCATATTGCAGTCCTTGGGCTGTATTGCGCAACATTCTGTTTCAGCATTTGAAGCTCAAAA TCAAGAGATTAGATCATACATATTTGGAAGAATTTTTCAAGCGGAATCATCTGAAGATGAACATTCAGCTGACGAGACTTCTGAGTGTTGTGATTCTTGC AAGCTGAAGATTTATGCGCTGAAAGCACTTGTCAAGAGTTTTTTGCCACATCGAGGATCTCATGGCAAGCGGCATATCAATGAATTGCTAGATATTTTGT CAAAGTTGCTTCAAACAGGCTATACTTTTGATGGAATCACCTCATGCGAAAGCGACAAGCCTCACATCAAATTAGCTGCTGCGAAATCTGTTCTTCTGCT TTCTAGGAGATGGGATTTACATATTTCTCCAGAGATTTTTCGCTTTACAGTTTTGATGGCAAAGGAACCCTGTCCCTTTGTTGGGAGATTATTCCTTGAT AAAATGCATAAGCTGTTGAAGGAGCATTCTATACCGAGCAGATATGCTTGTGCTTATGCATTGGCTGCATCTGATCACTGCAAGGATCTGCAAGATGCTT CATTTAAATACATCGAAGAATTTATCAAGGAATATAGCAGAAAAGCTCAAATTCGTCAAACATCTGGAGTGCAAGAAAGCTCACCTATGGATTATCCAGC ATACATAGTTGTTTTCCTAATCCATGTTCTTGCACATGATGCTGGCTTCCCACCTGATGGCTGTCAAGATGAGCAAGTATATGCTCAGTTTTGCAGTCCC CTCTTTTGGGCCCTACAGGCATTGGTAAATGCTAGTATTGTCAATGGTGACACAGGACTTATTAATGAAGCAGCCTTGTATTTGCTCAGTATTTTTCGTG CTATAAAAAAAACTGAGGATGCTGTTGATGCTCATCAAACTCCTAAGCTGCTCATTCTGGCAGAGATTGGGATCTCTATAGTAAATGAATTAAATCATAA TGTCATTTCCTCATCACTTGCCCCCAAGCAGATTTCGCTGCCATCATCATTATATAGAATTAGTGTTGTTAAGAAGTGTGACGAGGGTATCTTGAAATGC CTCACTAAATTCAGTGTTGATGAAAGTTTTGTCAAAGGAGTAGTCCACATTCTCAAATCTCAAATATCTGGGACTGCTACCACCACTCTTTCCAAACGTA GGAGAAAGGGTCAAGAGGTTACCATTCAGTCTTCTGATGTTGAACACAACACAAGCAACCCAGCATCACAAAAGGTTGCTAGTTTGTCATTAACGGGTAC AAGAGAAAAGCAAAAAACTGCAGCTGAGGAAATTGGTTTGGGATGTAGACAAAAGCGTGCCCTTTCTCCAATTGATTCTGAATCCGTGGTATTGCAGAAT GAGCGGTCTGGTATTGTCATGCACAAAGATGATGCAAGTAAAAGTTCTAAATCCAACTTGGAGAAAAAACAGCGCTTGTCATCTCGTGCTTCTGCAACCA CAAAACCCTTGAAGCCTGGATCTCATGTTTCGAGTGTAGACAGAATGATTCCTTCTTTGAAAGAAAATGCTGAGGCTAGTAAAAGTATTACTCCCTCCAA TTATCCCAGGGCTGAGCTTAAAGAACCTCGCAGTTTGAGGATTTCTTATGACAGTGGTGACCTTATATGCTTGGATAGTGAGAGCCATGAGACTATGAGT GATAACTCCCCATTGGAAAAGGAGACCTTGCTCACCAAGGTGTCAAACACCTTCCATCCAATTCATTGCAGTCAAAGAGAAACTTGTAGTGCATTTGGAG ATGGTACTGTGAAACCGACCAAAAGCTTAGCAAGCATGGAAAGTGGAAGGTTCTCTGAAAGAGTGACTTCTTTTCCTGCTAAGGGAAAGAAAGGACAGAA AGTTCTCTTGGACATATCAGCATCAGAAATCATTGATGAAAATGAAGATTGTATTGCCAGAAGAACAAGGCGAAAGAAAGTCTAA
AA sequence Show only first row Show all	>Potri.002G084300.2 pacid=42778957 polypeptide=Potri.002G084300.2.p locus=Potri.002G084300 ID=Potri.002G084300.2.v4.1 annot-version=v4.1 MDESPLQLVSEIGDHLGRHARPNKDFLVKSLRQAANALSQIEQPLETFKKAEATKKLEAAIKPLRKSILKHYLIKHTDKEVKLLVAICVSEVFRVLAPEP PFEDKYLRDIFILFLNMFKELSDTASPHFLRRVKVLETVARCKCCVIMLDVDCHDLVLEMFKIFFSSVREHHQQSLIDEILSIMKHVLNEEASQALLDVI LLNLIKEGKAATPAASQLAASVIQTCEEKLEPFVCGFLTSCFLDRDAVESELKEFYHEILFKVFQCAPHMLLGVIPNLTQELLTDQVDVRIKAVNLIGKL LALPEHHAVQKYQSLFVEFKNRFSDKSAEVRLSVLQCAKACYIANPSGNVSREILTVLEGRLLDFDDRVRTQAAVVACDLARTNLRFFPPELISKVSERL RDKKISVRKKALEKLMEVYRDYCIMCSEGLMTASDHFEQIPCKVLMLSYDKDCKDFRPQNMELVIAEDLFPVFLPVEERTRHWIQLFSLFTSSHVKALIS ILSQKGRLQTEMQIYLAQRKKEKDSSSEEMERRIKNSFVKMSASFPDPLKAEECFHKLNQMKDSKIFIALEQLLDDRTIKSAQQTRDKFLKMIGDKHPHF EFLQLLSSKCSFNIFSSEHVQCILDHISSSGFEQHLKASAKLLLAIISVYPSFMRGLEEQFQLLLEENNSINDTLVEVLAKAGPHIKAKFSEFYPLLERI CLKGTRFQSKHAVSAIASLVGSSDEFIFSKLCKELVDSLYSGLNTPTILQSLGCIAQHSVSAFEAQNQEIRSYIFGRIFQAESSEDEHSADETSECCDSC KLKIYALKALVKSFLPHRGSHGKRHINELLDILSKLLQTGYTFDGITSCESDKPHIKLAAAKSVLLLSRRWDLHISPEIFRFTVLMAKEPCPFVGRLFLD KMHKLLKEHSIPSRYACAYALAASDHCKDLQDASFKYIEEFIKEYSRKAQIRQTSGVQESSPMDYPAYIVVFLIHVLAHDAGFPPDGCQDEQVYAQFCSP LFWALQALVNASIVNGDTGLINEAALYLLSIFRAIKKTEDAVDAHQTPKLLILAEIGISIVNELNHNVISSSLAPKQISLPSSLYRISVVKKCDEGILKC LTKFSVDESFVKGVVHILKSQISGTATTTLSKRRRKGQEVTIQSSDVEHNTSNPASQKVASLSLTGTREKQKTAAEEIGLGCRQKRALSPIDSESVVLQN ERSGIVMHKDDASKSSKSNLEKKQRLSSRASATTKPLKPGSHVSSVDRMIPSLKENAEASKSITPSNYPRAELKEPRSLRISYDSGDLICLDSESHETMS DNSPLEKETLLTKVSNTFHPIHCSQRETCSAFGDGTVKPTKSLASMESGRFSERVTSFPAKGKKGQKVLLDISASEIIDENEDCIARRTRRKKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77600			ARM repeat superfamily protein...		Potri.002G084300 [exp]	0	1
AT5G55060			unknown protein		Potri.011G089300 [exp]	2.00	0.7862
AT1G58060			RNA helicase family protein (....		Potri.004G222900 [exp]	2.23	0.8129
AT5G66210		CPK28	calcium-dependent protein kina...		Potri.007G057600 [exp]	3.31	0.7203	CPK16,Pt-CPK16.1
AT3G45630			RNA binding (RRM/RBD/RNP motif...		Potri.009G026200 [exp]	6.32	0.7480
AT4G00800		SETH5	transducin family protein / WD...		Potri.014G105601 [exp]	6.70	0.7615
AT2G26790			Pentatricopeptide repeat (PPR)...		Potri.004G066600 [exp]	10.95	0.7480
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Potri.013G048500 [exp]	15.00	0.7357	CHR923
AT5G64070		PI-4KBETA1, PI4...	phosphatidylinositol 4-OH kina...		Potri.005G059000 [exp]	17.14	0.7119
AT3G47890			Ubiquitin carboxyl-terminal hy...		Potri.012G071900 [exp]	17.43	0.7049
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Potri.019G021500 [exp]	17.74	0.7407

Compare expression of checked genes

Potri.002G084300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.