Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48200 74 / 2e-18 unknown protein AT1G20430 37 / 0.0007 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G013601 [exp] 38 / 0.0002 AT1G20430 122 / 1e-37 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042704 [exp] 104 / 5e-30 AT1G48200 82 / 2e-21 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G084400.3 pacid=42777592 polypeptide=Potri.002G084400.3.p locus=Potri.002G084400 ID=Potri.002G084400.3.v4.1 annot-version=v4.1 ATGGAGTTCGCGAACAGACTGGTAGCCGCAGCAACAAAAGCCGCAAACAACAACACAGTGATAAACGTGTGCCTTGTAGGATCCTTCCTGGTGCTAGCTG CGCGATCCGCGAACCAACAAAATAACATAGAAGCTTTAAAGGCCGAGAAGGACTCGCTAGTTAAATCGAACAAAGCCATGAAAAAGACCATGTGGGACTG GAAGCAACAGCTCTTCTCCGAAGCTGAGACCGACTCCGATTTGGTCACTGTTGCCAGACTCAGGGCCATCTACGGCGAGGCACCACCGCCACAAACTGGT ACTTTCTTTTACAAATCAGTGCATATCCTTCCACGTGCCTCCATAGCTTAA
AA sequence Show only first row Show all	>Potri.002G084400.3 pacid=42777592 polypeptide=Potri.002G084400.3.p locus=Potri.002G084400 ID=Potri.002G084400.3.v4.1 annot-version=v4.1 MEFANRLVAAATKAANNNTVINVCLVGSFLVLAARSANQQNNIEALKAEKDSLVKSNKAMKKTMWDWKQQLFSEAETDSDLVTVARLRAIYGEAPPPQTG TFFYKSVHILPRASIA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G48200			unknown protein		Potri.002G084400 [exp]	0	1
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Potri.012G014100 [exp]	1.00	0.7906
AT5G49210			unknown protein		Potri.001G317300 [exp]	4.47	0.7314
AT3G49660		AtWDR5a	human WDR5 \(WD40 repeat\) hom...		Potri.005G148500 [exp]	6.00	0.7838
AT1G29250			Alba DNA/RNA-binding protein (...		Potri.018G029300 [exp]	14.73	0.7441
AT2G27800			Tetratricopeptide repeat (TPR)...		Potri.018G093700 [exp]	14.83	0.7583
AT2G38730			Cyclophilin-like peptidyl-prol...		Potri.001G030000 [exp]	22.31	0.7598
AT5G48570		ROF2, ATFKBP65	FKBP-type peptidyl-prolyl cis-...		Potri.002G117200 [exp]	24.73	0.7446
AT4G33780			unknown protein		Potri.001G289600 [exp]	25.41	0.7039
AT5G51700		ATRAR1, RPR2, P...	Required for Mla12 resistance ...		Potri.015G132300 [exp]	27.16	0.7333	PBS2.1
AT5G08290		YLS8	YELLOW-LEAF-SPECIFIC GENE 8, m...		Potri.007G072700 [exp]	27.92	0.7113

Compare expression of checked genes

Potri.002G084400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.