Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77610 580 / 0 EamA-like transporter family protein (.1) AT1G21870 580 / 0 GONST5 golgi nucleotide sugar transporter 5 (.1) AT5G05820 176 / 1e-52 Nucleotide-sugar transporter family protein (.1) AT3G11320 172 / 5e-51 Nucleotide-sugar transporter family protein (.1) AT5G04160 171 / 6e-51 Nucleotide-sugar transporter family protein (.1) AT3G10290 162 / 5e-47 Nucleotide-sugar transporter family protein (.1) AT1G12500 160 / 5e-46 Nucleotide-sugar transporter family protein (.1) AT3G17430 114 / 1e-28 Nucleotide-sugar transporter family protein (.1) AT5G11230 108 / 1e-26 Nucleotide-sugar transporter family protein (.1) AT4G32390 108 / 1e-26 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G177200 [exp] 628 / 0 AT1G77610 561 / 0.0 EamA-like transporter family protein (.1) Potri.008G063400 [exp] 175 / 2e-52 AT3G11320 566 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.010G194100 [exp] 172 / 2e-51 AT3G11320 572 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.016G043200 [exp] 172 / 4e-51 AT5G04160 512 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.003G118000 [exp] 169 / 2e-49 AT1G12500 503 / 4e-180 Nucleotide-sugar transporter family protein (.1) Potri.001G247600 [exp] 161 / 4e-47 AT3G11320 476 / 4e-171 Nucleotide-sugar transporter family protein (.1) Potri.009G040800 [exp] 161 / 5e-47 AT5G05820 472 / 2e-169 Nucleotide-sugar transporter family protein (.1) Potri.001G114100 [exp] 161 / 2e-46 AT1G12500 483 / 8e-172 Nucleotide-sugar transporter family protein (.1) Potri.006G046600 [exp] 157 / 2e-45 AT5G04160 503 / 0.0 Nucleotide-sugar transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042700 [exp] 588 / 0 AT1G77610 602 / 0.0 EamA-like transporter family protein (.1) Lus10025645 [exp] 567 / 0 AT1G21870 563 / 0.0 golgi nucleotide sugar transporter 5 (.1) Lus10029663 [exp] 527 / 0 AT1G77610 547 / 0.0 EamA-like transporter family protein (.1) Lus10018189 [exp] 422 / 5e-150 AT1G77610 417 / 1e-148 EamA-like transporter family protein (.1) Lus10028255 [exp] 180 / 5e-54 AT3G11320 523 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10040234 [exp] 177 / 7e-53 AT3G11320 527 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10016446 [exp] 173 / 1e-51 AT5G05820 508 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10009878 [exp] 171 / 1e-50 AT3G11320 548 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10014832 [exp] 155 / 4e-44 AT3G11320 530 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10018043 [exp] 150 / 2e-42 AT3G10290 528 / 0.0 Nucleotide-sugar transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF08449 [poplar] [flax] UAA UAA transporter family
Representative CDS sequence Show only first row Show all	>Potri.002G084500.1 pacid=42778846 polypeptide=Potri.002G084500.1.p locus=Potri.002G084500 ID=Potri.002G084500.1.v4.1 annot-version=v4.1 ATGGAGGAGAGTGTGATTTTTCAGTGGAGTGTGTTTAGATCTGTGCTTGCTATTCTTCAATGGTGGGGTTTTAATGTCACTGTTATTATCATGAACAAAT GGATCTTCCAGAAATTGGATTTCAAGTTCCCGTTAACAGTATCTTGCATTCACTTCATATGCTCATCCATTGGAGCATATGTGGTAATCAAGGTGCTGAA GATCAAACCATTGATCATGGTCGAACCTGAAGATCGCTGGAGAAGGATATTTCCCATGTCGTTTGTGTTTTGCATCAACATAGTGCTGGGGAATGTGAGC TTACGTTTCATTCCAGTTTCATTTATGCAAACAATAAAGTCATTTACTCCTGCAACCACAGTTGTTTTGCAGTGGCTAGTTTGGAGAAAACATTTTGATT GGCGAATTTGGGCTTCTTTGATACCGATTGTTGGAGGAATACTCCTAACATCCGTTACTGAGCTTAGTTTTAATATGTTTGGATTTTGTGCTGCCTTATT TGGATGTTTGGCTACTTCAACAAAGACTATTCTTGCAGAATCTCTGCTGCATGGATATAAATTTGACAGCATAAACACTGTGTACTACATGGCACCTTTT GCAACCATGATCTTGGGATTACCAGCAATGTTGGTTGAAGGTAACGGGGTTATAAATTGGTTTCACACCCACGAGTCCGTCTGGCCTGCCGTCATCATCA TTTTCAGCTCTGGAGTGATGGCCTTTTGTCTCAACTTTTCCATCTTTTACGTAATTCATTCCACAACTGCAGTAACATTTAATGTGGCTGGAAATCTTAA GGTAGCAGTTGCTGTCTTAGTTTCTTGGCTGATATTCCACAACCCAATCTCTGCTATGAATGCTGTTGGATGTGCCATTACGCTTGTGGGATGTACGTTC TATGGGTATGTGAGGCACATGCTTTCCCAACAGTCCCCACCACCAGGAACTCCGCGAACACCCAGGACTCCAAGGAATAGGATGGAATTACTTCCCCTTG TAAATGATAAACTAGATGATAAGGTCTAA
AA sequence Show only first row Show all	>Potri.002G084500.1 pacid=42778846 polypeptide=Potri.002G084500.1.p locus=Potri.002G084500 ID=Potri.002G084500.1.v4.1 annot-version=v4.1 MEESVIFQWSVFRSVLAILQWWGFNVTVIIMNKWIFQKLDFKFPLTVSCIHFICSSIGAYVVIKVLKIKPLIMVEPEDRWRRIFPMSFVFCINIVLGNVS LRFIPVSFMQTIKSFTPATTVVLQWLVWRKHFDWRIWASLIPIVGGILLTSVTELSFNMFGFCAALFGCLATSTKTILAESLLHGYKFDSINTVYYMAPF ATMILGLPAMLVEGNGVINWFHTHESVWPAVIIIFSSGVMAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFHNPISAMNAVGCAITLVGCTF YGYVRHMLSQQSPPPGTPRTPRTPRNRMELLPLVNDKLDDKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77610			EamA-like transporter family p...		Potri.002G084500 [exp]	0	1
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Potri.008G073300 [exp]	2.00	0.9317
AT5G61840		GUT1, IRX10-L	Exostosin family protein (.1)		Potri.012G109200 [exp]	2.82	0.9234
AT2G21270		UFD1	ubiquitin fusion degradation 1...		Potri.004G163200 [exp]	3.60	0.9043
AT5G40470			RNI-like superfamily protein (...		Potri.017G069800 [exp]	3.87	0.9250
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.008G070200 [exp]	4.47	0.9188
AT2G22850	bZIP	ATBZIP6	basic leucine-zipper 6 (.1.2)		Potri.007G006900 [exp]	5.38	0.8722
AT3G18850		LPAT5	lysophosphatidyl acyltransfera...		Potri.009G112307 [exp]	5.65	0.9147
AT1G02305			Cysteine proteinases superfami...		Potri.014G109801 [exp]	6.08	0.8450
AT1G06130		GLX2-4	glyoxalase 2-4 (.1.2)		Potri.007G131300 [exp]	6.92	0.9061	GLX2.2
AT2G01290		RPI2	ribose-5-phosphate isomerase 2...		Potri.001G225700 [exp]	8.36	0.8978

Compare expression of checked genes

Potri.002G084500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.