Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77620 634 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G04730 62 / 3e-09 CTF18 CHROMOSOME TRANSMISSION FIDELITY 18, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G22010 62 / 4e-09 ATRFC1 replication factor C 1, replication factor C1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G177000 [exp] 1810 / 0 AT1G77620 642 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G213900 [exp] 65 / 4e-10 AT5G22010 1117 / 0.0 replication factor C 1, replication factor C1 (.1) Potri.001G050300 [exp] 54 / 7e-07 AT1G04730 1058 / 0.0 CHROMOSOME TRANSMISSION FIDELITY 18, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035108 [exp] 763 / 0 AT1G77620 536 / 4e-171 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013372 [exp] 65 / 4e-10 AT5G22010 1128 / 0.0 replication factor C 1, replication factor C1 (.1) Lus10043134 [exp] 65 / 6e-10 AT1G04730 946 / 0.0 CHROMOSOME TRANSMISSION FIDELITY 18, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10028430 [exp] 46 / 0.0002 AT5G66130 532 / 0.0 RADIATION SENSITIVE 17 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G084700.8 pacid=42777789 polypeptide=Potri.002G084700.8.p locus=Potri.002G084700 ID=Potri.002G084700.8.v4.1 annot-version=v4.1 ATGGATATATCAGCCGATGACGAAGGACCAGTGGCGGTGGCGCCCGCAGCTGAAGAGATTCCGCAGCCGGAACAGAGTGTTCGCCGGAGACTGGTACAGT CCACGCTGTTCCCTCACAAATCGCCGGAAATCGAATTGAACAGTGAAAAAAATATCGATGAAAACTGCAATGGCGAGGAGTATCGTGGGAGTCAAAATAA GAAGAAGAGAATGCAAAAGGGAAAGACAACTCCACTAACCAGAACTGCTAAAAAGTCTATGTTGTTACAGCACAAATTACCGGGAACAGAATCCAACTGT TATCAGAAACGCGAGAAAGAATGTAATGTCGAGGATGGGAAAGGCGAAGGTGAATGTGAGGAGTGCTGTGGGAGTCAGAAGAAACGAACACGGATAGGAA AGGCAACACCACAAAGTAGAACTCCTAAAAAGTCAAAGGAGAAGTCACCTATGAATGGTACGCCTAAGAAGAATGGCACAGATAATGGGAAAGGCATCTC TAATCTGGTAGAGAACCAGGGTGTATCATCACCAATCCCTAATTTGAGGTTAGAGGCCAAGATGGCAGCTGAGGAAAATTCACGAATGTTTGCTGGAAGG CAAATTCATCCCTTTTTCTCATCATGGAAAGTGAGTAAGAGATGTGACGAGACAAATGCAGTGGAAAGTAATCATCACTTGGCCCGGAGAAAAGCTAAAG GCATCAATATTGGTCCTATTCATGTCTTTGAAAGGGGTCAGGATGATGCAAGGCCTCTTGATTGGAGTGATTGGATAGTTTGTGAGAAACCATTTATCGA TAGCAGTTTTAGCCTAGAAAGCTCCTTCTCATCAAACTTTGAAGGCTTCATTGGATTATTAGACATAAATGATTTCCCCAGCTCATCACATCCTCCTGGT ACATCACTTCCTCGAGATAATGCATCTTTGGATCAATGCCTTTGTCAACAAGAATTTGTGTGTGAAGCACCAGCAATAGTCTCTTCCAGATCATCTGATG TGCAGTTGGGATGCTGTCAGCTTGCAGAGGATGCAGAAACTGTATGCATAGCAACACCAGTTAACAATCTTGACTGTGAGGCTGTTGAAGTTCATATCAT TTCTGCTTCTGCTAGAAAATCAGATGCTAAACAGCTAAGTGATCTTCTTCAAGAAAGGACTGTCCCATTGTACATTAGTCGCACTAAACAGATTGAGAAT AGATTATGGACAGATAAGTACCAGCCAAAGAATGCCACTGAGGTTTGTGGAAATGATGAATCAGTGAAACTTTTGAGCAACTGGCTTCATTCTTGGCAAC AAAGGGGCCATCAAGTCTGTACGGATACCTACAGCGGTGATGTATGTGATAGACAAGATGCTGATTATTACCGTGTCCAAAGTGAATCTGATTCAGAAAA CAATAATGAAGGGGCCAGCCTTAAGAATGTTCTTTTGATCACTGGACCAACTGGGAGCGGGAAGTCTGCTGCTATCTATGCTTGTGCAAAAGAAGAAGGA TTCAAAGTTCTGGAGGTCAATGCATCAGATTATCGAAATGGAGCTTTGGTGAAACAAAGATATGGAGAGGCATTAGAATCCCATTTCCTTCATTGGTCAC AGAAAACTCATGTGGAACCACAGAGCAACAACATTACAAAATTTTCCTCAGCCCTTCCTGACAGTAAATTGACACAAGATTTCTACAGAAAAATGGTTGA GGTGGTACCAATATCAGATGAGGATAATTCTCTTGGAGCCACTGAGGCCACTGTTAAGTTTGATTCCAATGACAGTACAATTGCCTGTGGTCAAGGGAAA CTTAAACACTTGATTCTTTTTGAAGATGTGGATCTTGCTTTTACTGAAGACCGTGGCTTTGTCGCTGCAATACAACAAATAGCTGAAAAGGCAAAAGGGC CTGTGATACTGACCAGCAATTGTGAAAACCCTGATCTTCCTGCCAATTTGGACAGGCTAGAAGTTTGTTTTGTGTTGCCATCAGAGAAGGAGCTTCTTCG GCTTGCAGATATGGTTTGTTCTGCTGAGAAGGTCAACATTCAAGCTCATCTACTAAAGCAAGTGGTTGAATATTGTCAAGGAGATATCCGAAAAACCATT ATGCATCTTCAATTCTGGTTTCAGGGCAGACAAATTAGAAAACTGTCTCCAAGTAGAGAAGCACAAAGACTGTTTGGTCCTCTGATGTTTGATCCTGAGG CTGGGCATCAAGTTTTGCCAAAGATGATGCCATGGGATTTCCCTTGTCAGTTATCTGAGCTAGTTGAAAAGGAGATTGCAACTTCATTGTCTATGATGGT AGAAAATTCTGTCTCATTGGAGGTCATAAAAGAAGATTTTGAAGATAAAGAATTGCAGAATAACATAAAGATTCATAATTATGGCAAAGACAGTGGTACA AAGACCAAGAAGGAAGCAATGTTAAGCCAAAATTGCTTTGATAACGATTGCAATCACTTCAAAATCCCATATGATTCAGTATGTGATGTTTTCAATTCCC CTGGAACCCCGGTGTCATTGACTCCAAGAAAAAATAGAAGGAAGCTCGGTGTAGTAATGCCTTCTGATTCTGAAGATGAGATGGTCAATGATAGAGTTAC CTTAACTACAGACAGGGATACTAACTATGAATTAATCCTTGAAGCTGATGGTGGATTTCCCTCTCATTGTTTAAGCATGCAACCATCAACTGACATGCAA CTTTGTCCTGGAGCGGAGAAACTAGATGAAAATCATAGTAAATATCCAGATATAGGAATTAATTTACATGTAAAAGAGACATGCATGTCTGTTGATGCAT CATGCGTGCCAGAATCAACATTTGTTCCTGAAACTGAAATTAATAATGGAACAGAGGTGTCATTCAGCATGGTGTCCTGCACTCGAGTGGGTGATGCTTT GGAAGAAGTTTCAATGATCATTGAGTCCAAGCAAAACCTGTTGCCTGTTGAAACTGAAAATATTGACAGATATGTGCCTGATATGTTGGGAAGTACTTGT GATGTAATTGCAGAATTATCTCCTGACGTGGTAGAAGATTCTCTAAATGAACATGTGGAAGCTTTAACAAAAGAATATCAAGTGATGGATAAGTATAGCT GCATGGATTTCAATAAGAAATCCAAGCCAGTGGAGAAATTTCGATCCTGTATGATGACTGATTTAGTGCGTGAATCATGGAGAAAACTTTGCAATCGTCA CCCAGATCTAAGACATTTTGTCACCTCAGAAGTCATAGATGCTACTGGGATGATGGACCTTGCATATGGAATGAGCAATCTGATTTCAGAAGCTGAACTG TTGCTTTCGAATCACCAGACTTTGGATTCCTTGGAATCATCAGTGGTCCATTCTGAGGTAATGGATGTATCCAGCTGGTCTGATGAGAATTTGAAAATGT CATCAGCAATAACGCAGCAAGGTTTTTGCTTTTATGCCAAAGAAATTGCTAATTTAGGGTTAAAAATGGGTTTGGATTCCAAGGTAGATTTCACCAGGGA GATGCTGTCTACCGCTAGTATGATGGAAGTTGATAACTTGGTTAGACAGAATTTGAGTAGCAAGAGTTCACACTCTAGGTTGAGTACTGAGATGAACCAG CCAGAAAGGGGGACGTCATCAAATAGGTATTCTGCAAACAGTGAAATGAAGTCTTGTCTTTTTTATATAATCCAGTCACTAGTCCCTTCGCGATCGTACA TGACAGTGAAAGGTGAAGCGTTCTATGAATATCTATCTTCTCTGGGCCACATTGCCAGATCAGAAGCTTCTCGATTATCGGCAAGCATTGACAAGATAAA AGGACGGAGGACACGAGCTTCTCGAAACTACTTGAGCGGTGGTTCACTAATGTTGTCTCCAGAAGAAATTTCATTGCTGGGTCGGTCTAACATCTACCCG AAGATGTTGTCACAATCAATGGACAGCACAGATAAAACTATATAA
AA sequence Show only first row Show all	>Potri.002G084700.8 pacid=42777789 polypeptide=Potri.002G084700.8.p locus=Potri.002G084700 ID=Potri.002G084700.8.v4.1 annot-version=v4.1 MDISADDEGPVAVAPAAEEIPQPEQSVRRRLVQSTLFPHKSPEIELNSEKNIDENCNGEEYRGSQNKKKRMQKGKTTPLTRTAKKSMLLQHKLPGTESNC YQKREKECNVEDGKGEGECEECCGSQKKRTRIGKATPQSRTPKKSKEKSPMNGTPKKNGTDNGKGISNLVENQGVSSPIPNLRLEAKMAAEENSRMFAGR QIHPFFSSWKVSKRCDETNAVESNHHLARRKAKGINIGPIHVFERGQDDARPLDWSDWIVCEKPFIDSSFSLESSFSSNFEGFIGLLDINDFPSSSHPPG TSLPRDNASLDQCLCQQEFVCEAPAIVSSRSSDVQLGCCQLAEDAETVCIATPVNNLDCEAVEVHIISASARKSDAKQLSDLLQERTVPLYISRTKQIEN RLWTDKYQPKNATEVCGNDESVKLLSNWLHSWQQRGHQVCTDTYSGDVCDRQDADYYRVQSESDSENNNEGASLKNVLLITGPTGSGKSAAIYACAKEEG FKVLEVNASDYRNGALVKQRYGEALESHFLHWSQKTHVEPQSNNITKFSSALPDSKLTQDFYRKMVEVVPISDEDNSLGATEATVKFDSNDSTIACGQGK LKHLILFEDVDLAFTEDRGFVAAIQQIAEKAKGPVILTSNCENPDLPANLDRLEVCFVLPSEKELLRLADMVCSAEKVNIQAHLLKQVVEYCQGDIRKTI MHLQFWFQGRQIRKLSPSREAQRLFGPLMFDPEAGHQVLPKMMPWDFPCQLSELVEKEIATSLSMMVENSVSLEVIKEDFEDKELQNNIKIHNYGKDSGT KTKKEAMLSQNCFDNDCNHFKIPYDSVCDVFNSPGTPVSLTPRKNRRKLGVVMPSDSEDEMVNDRVTLTTDRDTNYELILEADGGFPSHCLSMQPSTDMQ LCPGAEKLDENHSKYPDIGINLHVKETCMSVDASCVPESTFVPETEINNGTEVSFSMVSCTRVGDALEEVSMIIESKQNLLPVETENIDRYVPDMLGSTC DVIAELSPDVVEDSLNEHVEALTKEYQVMDKYSCMDFNKKSKPVEKFRSCMMTDLVRESWRKLCNRHPDLRHFVTSEVIDATGMMDLAYGMSNLISEAEL LLSNHQTLDSLESSVVHSEVMDVSSWSDENLKMSSAITQQGFCFYAKEIANLGLKMGLDSKVDFTREMLSTASMMEVDNLVRQNLSSKSSHSRLSTEMNQ PERGTSSNRYSANSEMKSCLFYIIQSLVPSRSYMTVKGEAFYEYLSSLGHIARSEASRLSASIDKIKGRRTRASRNYLSGGSLMLSPEEISLLGRSNIYP KMLSQSMDSTDKTI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77620			P-loop containing nucleoside t...		Potri.002G084700 [exp]	0	1
AT2G45320			unknown protein		Potri.014G068500 [exp]	1.73	0.8120
AT5G35180			Protein of unknown function (D...		Potri.018G113100 [exp]	3.87	0.7604
AT5G49960			unknown protein		Potri.013G128100 [exp]	8.94	0.7826
AT4G38010			Pentatricopeptide repeat (PPR-...		Potri.015G138000 [exp]	9.64	0.7915
AT5G51230	C2H2ZnF	AtEMF2, CYR1, V...	CYTOKININ RESISTANT 1, EMBRYON...		Potri.003G150450 [exp]	9.94	0.7693
AT5G10690			pentatricopeptide (PPR) repeat...		Potri.006G274133 [exp]	10.19	0.7830
AT1G60200			splicing factor PWI domain-con...		Potri.008G147100 [exp]	13.56	0.7757
AT1G50030		TOR	target of rapamycin (.1.2)		Potri.001G289200 [exp]	14.83	0.7728	Pt-TOR.1
					Potri.004G011701 [exp]	16.61	0.7640
					Potri.015G138050 [exp]	18.13	0.7759

Compare expression of checked genes

Potri.002G084700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.