Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21880 554 / 0 LYM1 lysm domain GPI-anchored protein 1 precursor (.1.2) AT1G77630 485 / 6e-171 LYM3 lysin-motif \(LysM\) domain protein 3, Peptidoglycan-binding LysM domain-containing protein (.1) AT2G17120 129 / 7e-34 LYM2 lysm domain GPI-anchored protein 2 precursor (.1) AT2G23770 55 / 6e-08 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G176700 [exp] 679 / 0 AT1G21880 548 / 0.0 lysm domain GPI-anchored protein 1 precursor (.1.2) Potri.004G183500 [exp] 142 / 1e-38 AT2G17120 318 / 3e-107 lysm domain GPI-anchored protein 2 precursor (.1) Potri.009G143300 [exp] 125 / 2e-32 AT2G17120 311 / 1e-104 lysm domain GPI-anchored protein 2 precursor (.1) Potri.015G085350 [exp] 64 / 2e-11 AT2G23770 125 / 7e-33 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.009G010300 [exp] 62 / 4e-10 AT2G23770 234 / 3e-68 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G128200 [exp] 60 / 2e-09 AT2G23770 514 / 4e-176 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.002G226600 [exp] 57 / 2e-08 AT3G21630 697 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.005G128300 [exp] 54 / 2e-07 AT2G23770 394 / 2e-129 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G160501 [exp] 49 / 2e-06 AT2G23770 66 / 3e-12 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025643 [exp] 595 / 0 AT1G21880 547 / 0.0 lysm domain GPI-anchored protein 1 precursor (.1.2) Lus10018191 [exp] 585 / 0 AT1G21880 550 / 0.0 lysm domain GPI-anchored protein 1 precursor (.1.2) Lus10014441 [exp] 142 / 2e-36 AT4G38380 501 / 2e-167 MATE efflux family protein (.1) Lus10023945 [exp] 134 / 2e-35 AT2G17120 280 / 4e-92 lysm domain GPI-anchored protein 2 precursor (.1) Lus10026372 [exp] 130 / 6e-34 AT2G17120 249 / 3e-80 lysm domain GPI-anchored protein 2 precursor (.1) Lus10003326 [exp] 120 / 3e-30 AT2G17120 255 / 1e-82 lysm domain GPI-anchored protein 2 precursor (.1) Lus10022630 [exp] 118 / 1e-29 AT2G17120 255 / 1e-82 lysm domain GPI-anchored protein 2 precursor (.1) Lus10023946 [exp] 70 / 1e-14 AT2G17120 138 / 6e-41 lysm domain GPI-anchored protein 2 precursor (.1) Lus10014442 [exp] 71 / 7e-14 AT2G17120 223 / 2e-72 lysm domain GPI-anchored protein 2 precursor (.1) Lus10042285 [exp] 61 / 6e-10 AT1G73470 152 / 8e-42 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0187 [poplar] [flax] LysM PF01476 [poplar] [flax] LysM LysM domain
Representative CDS sequence Show only first row Show all	>Potri.002G084800.1 pacid=42780034 polypeptide=Potri.002G084800.1.p locus=Potri.002G084800 ID=Potri.002G084800.1.v4.1 annot-version=v4.1 ATGCCAAGCTCAAAATCCGTAACCTTTATCTTGATTTTCATCAATGCAGTAGCTTTAGTGACCTCCAAATCCACCATTGAGCCTTGCACCAACTCAGATT CCTGCAATGCTCTTCTTGCCTACACACTCTACACAGACCTCAAAGTCTCGGAAGTGGCCTCCCTCTTCCAAATTGACCCCATAGCTCTCCTCACAACCAA CGCCATCGACATCTCTTACCCAGATGTCGAAAACCACATCCTCCCTTCACAACTCTTCCTCAAAATCCCCATCACTTGCTCATGTGTTGATGGAATCCGC AAATCCGTCTCGACCCACTACAAAACAAGGCCTTCAGATACATTATCTTCCATTGCAGACTCAATCTATGCAGGTTTGGTTTCTGCGGACCAGATAAAGG AGGCGAATTCCATTGATGATCCTTCAGTGCTTGATGTTGGGCAGAGCCTTGTTGTTCCTTTGCCTTGTACTTGTTTTAATGGGACGGACAATTCGTTGCC TGCTATTTATTTGTCTTATGTTGTCAAGGAGGTGGATACTCTGGCTGCCATTGCTGCGCGGTATGAAACTACACTTACTGATTTGATGAATGTTAATGCT ATGGGGAGTGCTGCAATTAAGGCTGGTGATATTCTTGCTGTGCCATTGCCAGCTTGTGCTTCCAAGTTTCCAAGATATGCTTCTGATTTTGGTTTGATTG TGCCAAATGGGAGCTACGCTATCTCTGCAAGTCACTGTGTCCAATGCAGTTGTGGACCTGGAAACCTCAATTTGTACTGCATGCCTGCTTCCTTGGCAGT TTCTTGTTCGAGCATGCAATGTAGGAATAGCAATCTCATGCTTGGGAATGTTACGGTGCAGCAGAGTAGTGCTGGGTGTAATGTAACTTCTTGCAACTAT GGTGGATATGTCAATGGCACTATTATGACCACGCTGTCAACATATCTCCAACCTCGATGTCCAGGATCACAACAATTTCCTCCCCTGGTAGTACCACCCA CCACAGTGATCAGGGATTCAACTTTTGCTCCAGCACCTGCACCTCAGTCAGATGGTTCTAGTACACCAACACCCACACCCAAGACCGAAGTTGTGCCAGC AACTGGATCGCTTCCTGGATTACCTCCAGCAAGTGGCCCAGTTGGAAGTATTTCTCTTTCTTTCTCAGTCAATCCATCAGCCACTCTCATGATCGCAGCT GTGCTACTCTTGTTTGCCATGACCTCCATTCCATTGTAG
AA sequence Show only first row Show all	>Potri.002G084800.1 pacid=42780034 polypeptide=Potri.002G084800.1.p locus=Potri.002G084800 ID=Potri.002G084800.1.v4.1 annot-version=v4.1 MPSSKSVTFILIFINAVALVTSKSTIEPCTNSDSCNALLAYTLYTDLKVSEVASLFQIDPIALLTTNAIDISYPDVENHILPSQLFLKIPITCSCVDGIR KSVSTHYKTRPSDTLSSIADSIYAGLVSADQIKEANSIDDPSVLDVGQSLVVPLPCTCFNGTDNSLPAIYLSYVVKEVDTLAAIAARYETTLTDLMNVNA MGSAAIKAGDILAVPLPACASKFPRYASDFGLIVPNGSYAISASHCVQCSCGPGNLNLYCMPASLAVSCSSMQCRNSNLMLGNVTVQQSSAGCNVTSCNY GGYVNGTIMTTLSTYLQPRCPGSQQFPPLVVPPTTVIRDSTFAPAPAPQSDGSSTPTPTPKTEVVPATGSLPGLPPASGPVGSISLSFSVNPSATLMIAA VLLLFAMTSIPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Potri.002G084800 [exp]	0	1
AT1G70280			NHL domain-containing protein ...		Potri.010G094200 [exp]	1.00	0.9275
AT3G17350			unknown protein		Potri.010G152900 [exp]	3.74	0.9246
AT2G34190			Xanthine/uracil permease famil...		Potri.011G068200 [exp]	4.89	0.9178
AT5G24318			O-Glycosyl hydrolases family 1...		Potri.001G240000 [exp]	6.24	0.8971
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Potri.005G176700 [exp]	7.14	0.8931
AT5G56580		ANQ1, ATMKK6	ARABIDOPSIS THALIANA MAP KINAS...		Potri.018G068500 [exp]	9.00	0.9123	Pt-MKK6.1
AT4G38660			Pathogenesis-related thaumatin...		Potri.009G132500 [exp]	9.16	0.9102
AT1G21090			Cupredoxin superfamily protein...		Potri.005G192800 [exp]	11.53	0.8648
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Potri.001G043600 [exp]	12.48	0.9110
AT3G56370			Leucine-rich repeat protein ki...		Potri.013G091000 [exp]	13.22	0.8992

Compare expression of checked genes

Potri.002G084800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.