Plant FIBer expression Database

Potri.002G085000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G08310 285 / 3e-90 unknown protein
AT1G44780 151 / 2e-40 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G176400
[exp]
396 / 1e-132 AT4G08310 153 / 2e-40 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028028
[exp]
355 / 1e-117 AT4G08310 340 / 8e-112 unknown protein
Lus10003736
[exp]
310 / 3e-100 AT4G08310 293 / 5e-94 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09649 CHZ Histone chaperone domain CHZ
Representative CDS sequence
>Potri.002G085000.3 pacid=42776708 polypeptide=Potri.002G085000.3.p locus=Potri.002G085000 ID=Potri.002G085000.3.v4.1 annot-version=v4.1
ATGGCAGAGGAGATGCAAGAGCAAGCCACCGAGACGGTGAAAAAAGAAACGCCCGACGAGTCGCTCGATATCGAGTCCCAAGTCAAGGAAGCAATGCTCT
CTCGCGTTAGCCACTTCAAAAAACAAGCCGACTCTCTGACGTTTGAGGGGGTGCGGAGACTGTTAGAGAAGGACTTGGGATTGGAAAAATTAGCGTTGGA
TGTGCATAAGAGATTTGTCAAGCAGTGTTTATTTGAGTGCTTAGATGGTGCTGTTACTGACAATGCCTCCAAGGACTCTGGGGATACAGTGGAAAAACAC
GTTGATTCTCCAAAAGAAGTTACAGAATCACCTGAAAGACGAGATTTGAAAAACAATATAAAGGAACCTTGCTCTGAAGACGAGGAAAAAATGGAAGACT
CTCCTGTAATGGGCCTTTTGTCAGGACAAAAAACAACAAAATCAAAGGCCAAGGATACTCAAGCAAATGAGGTTAAAGAAGTTCCAAGTGAAGGCAGCAT
AAAGAAAGCCATGATGAGACGGGCTTCTTATATCAAAGCTAATTCCGAGGAAATTACAATGGCTGGACTTCGTCGACTCTTAGAGGAAGATCTTAAACTC
GATAAATTTTCGCTCGATCCCTACAAGAAGTTCATTAGCAAGCAATTAGATGAGGTATTAAAATCTTCTCAAGTTTCTGAACCTAAGAAGAAAACTCTTA
AGAACAATTCTCATGGTAAAGCATCTAAAAAGGTTAGCAGTAGAGAGAGCGCAGATTCTTCAGATAAAGAGAGCGAGGAGGAAGATGAAGAGGTAAAACC
AAAGAAAAAGAAAATTGGTGTTGAACGAAAGATGCAGAACTCCGAAGGGTCTAAAAAGCGGAGGAGAACTGAAAAGGAAACCAAAGTATCTGCCAACAAG
CGAATCAAGCCTTTGGAAACAGCAGCAGAGGACAACAGCGATTCAGAAGTCAGTGGAAATGCTTCAGAAGACAACAATTCTCCATCATCAGCGGAAAAAC
CAGTCAAGAAAAAGGAAGCTTCTACTCCAGCATATGGGAAACGCGTGGAGCATCTGAAATCAGTCATTAAATCCTGTGGGATGAGTGTGCCTCCTTCGAT
TTATAAGAAGGTGAAGCAAGCGCCTGAGAACAAACGTGAGGCTCGGCTAATAAAGGAACTTGAAGAAATTCTTTCTAGAGAAGGATTGTCGTCAAATCCT
TCTGAAAAAGAGATCAAGGAAGTCAGAAAGAGAAAGGAAAGGGCAAAAGAACTTGAGGGCATTGACTTGAGCAACATTGTGACAACTTCACGTAGAAGGT
CTGCCACCAGTTTTGTAGCTCCACCAAAACCAAAAGTGCCAGATGAAAGTGAGAGTGATGACACTGGTGATACAGAAGAGGATGATGAGGATGGCGAGGA
GGAGGATGGCAATGATGGAGATGATGGAGATAATGATGGAGATGACAACAAGGGTGGTGATAGCCCAACTGAAGAGGCTGATGAGGATCAAGATGATGGC
AGCCACTGA
AA sequence
>Potri.002G085000.3 pacid=42776708 polypeptide=Potri.002G085000.3.p locus=Potri.002G085000 ID=Potri.002G085000.3.v4.1 annot-version=v4.1
MAEEMQEQATETVKKETPDESLDIESQVKEAMLSRVSHFKKQADSLTFEGVRRLLEKDLGLEKLALDVHKRFVKQCLFECLDGAVTDNASKDSGDTVEKH
VDSPKEVTESPERRDLKNNIKEPCSEDEEKMEDSPVMGLLSGQKTTKSKAKDTQANEVKEVPSEGSIKKAMMRRASYIKANSEEITMAGLRRLLEEDLKL
DKFSLDPYKKFISKQLDEVLKSSQVSEPKKKTLKNNSHGKASKKVSSRESADSSDKESEEEDEEVKPKKKKIGVERKMQNSEGSKKRRRTEKETKVSANK
RIKPLETAAEDNSDSEVSGNASEDNNSPSSAEKPVKKKEASTPAYGKRVEHLKSVIKSCGMSVPPSIYKKVKQAPENKREARLIKELEEILSREGLSSNP
SEKEIKEVRKRKERAKELEGIDLSNIVTTSRRRSATSFVAPPKPKVPDESESDDTGDTEEDDEDGEEEDGNDGDDGDNDGDDNKGGDSPTEEADEDQDDG
SH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G08310 unknown protein Potri.002G085000
[exp]
0 1
AT3G06400 CHR11 chromatin-remodeling protein 1... Potri.010G021400
[exp]
11.04 0.7108
AT5G67190 AP2_ERF DEAR2 DREB and EAR motif protein 2 (... Potri.007G046500
[exp]
13.56 0.6305
AT5G46070 Guanylate-binding family prote... Potri.011G058500
[exp]
17.54 0.6896
AT3G58110 unknown protein Potri.013G119700
[exp]
17.88 0.6916
AT2G39260 binding;RNA binding (.1) Potri.008G045400
[exp]
19.51 0.6914
AT3G51620 PAP/OAS1 substrate-binding dom... Potri.019G128800
[exp]
22.24 0.6110
AT3G05900 neurofilament protein-related ... Potri.013G001150
[exp]
30.16 0.6509
AT5G14980 alpha/beta-Hydrolases superfam... Potri.001G466700
[exp]
33.94 0.5810
AT1G31930 XLG3 extra-large GTP-binding protei... Potri.015G031100
[exp]
34.14 0.6542
AT5G49470 PAS domain-containing protein ... Potri.008G105100
[exp]
34.85 0.5979

Potri.002G085000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.