Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21890 480 / 4e-170 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08300 478 / 1e-169 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G44800 468 / 1e-165 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G39510 388 / 4e-134 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37460 381 / 3e-131 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08290 380 / 7e-131 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G07050 375 / 2e-128 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G40900 335 / 5e-113 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G56620 332 / 7e-112 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G13670 303 / 1e-100 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G176200 [exp] 657 / 0 AT4G08300 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176100 [exp] 428 / 6e-150 AT4G08290 427 / 2e-149 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.006G082700 [exp] 391 / 1e-135 AT2G37460 488 / 4e-174 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G051500 [exp] 391 / 3e-135 AT2G39510 472 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 390 / 3e-134 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 387 / 3e-133 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.010G209200 [exp] 385 / 1e-132 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G032500 [exp] 377 / 3e-129 AT5G07050 530 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G192500 [exp] 373 / 1e-127 AT5G07050 546 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028030 [exp] 509 / 0 AT4G08300 455 / 8e-161 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10003738 [exp] 506 / 2e-180 AT4G08300 453 / 6e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008706 [exp] 392 / 2e-135 AT5G07050 543 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008708 [exp] 390 / 3e-134 AT5G07050 552 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10024424 [exp] 389 / 5e-134 AT2G37460 486 / 2e-172 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10041634 [exp] 388 / 2e-133 AT5G07050 557 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026113 [exp] 386 / 5e-133 AT5G07050 537 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026112 [exp] 388 / 6e-132 AT5G07050 555 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10040311 [exp] 375 / 5e-129 AT2G39510 482 / 2e-171 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10023432 [exp] 375 / 5e-129 AT2G39510 480 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF00892 [poplar] [flax] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Potri.002G085100.2 pacid=42777853 polypeptide=Potri.002G085100.2.p locus=Potri.002G085100 ID=Potri.002G085100.2.v4.1 annot-version=v4.1 ATGGGAAACCAAACCCCATGTGAGAAGTTGTACCTAGGGCTCAAGAAAGTTAAACCTTACTTGGCTATGGTCTCCCTTCAATTTGGATATGCTGGAATGT ACATCATCACCATGGTTTCTTTGAAGCATGGCATGAGTCATTACATACTAGCTGTGTACCGTCATGTAGTTGCTACGATTGTTATCGCACCTTTTGCCTT GGTCCTTGAAAGGAAAATAAGGCCAAAGTTGACGCTCCCAATTTTCCTTAGGATAATGGCGCTTGGTTTTCTTGAGCCAGTGCTTGATCAGAATTTGTAT TATCTGGGAATGAAGTACACCTCAGCTACATTTGCATCTGCTACAGTAAATGCCCTCCCGGCCATAACCTTTATAATGGCACTTATTTTCAGGTTGGAGA CAGTCAACTTTAAGAAGCTACACAGCGCAGCCAAGGTGGTGGGGACGGTTATCACGGTCACAGGAGCAATGGTTATGACCTTATACAAAGGTCCAATCAT CGATTTTATAAGATCGCAAGGAGCAGCTCACCGTGGAACCACAAGCAATGCGTCCGGTAATCAGCATTGGCTTACTGGAACACTAATGCTCCTAGCCAGT TGTTGTGGCTGGGCAAGTTTCTTCATATTGCAATCCTTTACTTTGAAGAAATACCCAGCAGAGCTTTCTCTCACAGCATTGATATGCATGACGGGCATGG TGGAAGGTGCAGCAGTGTCACTTGTTATGGAACGTGACATGAGTGCCTGGAAAATAGGCTTTGACTCTAGGCTTCTAGCTGCTGCTTACTCCGGAGTGGT TTGTTCTGGAATTGCATATTATGTGCAAGGTGTGGTAATAAGGAAAAAAGGCCCTGTCTTTGTAACTTCTTTTAGCCCTCTTTGCATGATCATCACGGCA GCTCTTGGATCCGTTGTTCTATCGGAGCAAATCCGCCTTGGAAGTATAATTGGAGCAGTTCTAATAGTTTTTGGCCTGTACACTGTGGTGTGGGGTAAGA GCAAGGATAGTATAAGCTCATCAACAATGGAGTTGACAAATGAGAAAGGTGGACCCCAAGATCAGCTGCCAATCCAAGATAGTAGCAGGCTATCGTCGTC GACCAGTTTTGCAAATAGCACGCAAGGACCTGACGATGGAATGTCCAAGTAA
AA sequence Show only first row Show all	>Potri.002G085100.2 pacid=42777853 polypeptide=Potri.002G085100.2.p locus=Potri.002G085100 ID=Potri.002G085100.2.v4.1 annot-version=v4.1 MGNQTPCEKLYLGLKKVKPYLAMVSLQFGYAGMYIITMVSLKHGMSHYILAVYRHVVATIVIAPFALVLERKIRPKLTLPIFLRIMALGFLEPVLDQNLY YLGMKYTSATFASATVNALPAITFIMALIFRLETVNFKKLHSAAKVVGTVITVTGAMVMTLYKGPIIDFIRSQGAAHRGTTSNASGNQHWLTGTLMLLAS CCGWASFFILQSFTLKKYPAELSLTALICMTGMVEGAAVSLVMERDMSAWKIGFDSRLLAAAYSGVVCSGIAYYVQGVVIRKKGPVFVTSFSPLCMIITA ALGSVVLSEQIRLGSIIGAVLIVFGLYTVVWGKSKDSISSSTMELTNEKGGPQDQLPIQDSSRLSSSTSFANSTQGPDDGMSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21890			nodulin MtN21 /EamA-like trans...		Potri.002G085100 [exp]	0	1
AT2G38400		AGT3	alanine:glyoxylate aminotransf...		Potri.016G132200 [exp]	2.44	0.8633	AGT3.1
AT2G28305		ATLOG1	LONELY GUY 1, Putative lysine ...		Potri.004G212200 [exp]	2.82	0.8159
AT3G30530	bZIP	ATBZIP42	basic leucine-zipper 42 (.1)		Potri.010G135200 [exp]	5.00	0.8146
AT2G40200	bHLH	bHLH051	basic helix-loop-helix (bHLH) ...		Potri.010G186700 [exp]	6.00	0.8178
AT2G37900			Major facilitator superfamily ...		Potri.006G092000 [exp]	9.16	0.8042
AT3G08640			Protein of unknown function (D...		Potri.006G111300 [exp]	9.38	0.7474
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Potri.019G034800 [exp]	10.39	0.7270	Pt-GDH1.1
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Potri.018G083700 [exp]	11.61	0.7699
AT1G05710	bHLH	bHLH153	basic helix-loop-helix (bHLH) ...		Potri.013G126800 [exp]	11.61	0.7884
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Potri.003G051600 [exp]	12.60	0.7109

Compare expression of checked genes

Potri.002G085100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.