Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44820 660 / 0 Peptidase M20/M25/M40 family protein (.1) AT1G44180 644 / 0 Peptidase M20/M25/M40 family protein (.1) AT4G38220 501 / 6e-177 AQI aquaporin interactor, Peptidase M20/M25/M40 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G085500 [exp] 832 / 0 AT1G44820 636 / 0.0 Peptidase M20/M25/M40 family protein (.1) Potri.009G169300 [exp] 524 / 0 AT4G38220 646 / 0.0 aquaporin interactor, Peptidase M20/M25/M40 family protein (.1.2) Potri.004G208100 [exp] 514 / 0 AT4G38220 635 / 0.0 aquaporin interactor, Peptidase M20/M25/M40 family protein (.1.2) Potri.003G091100 [exp] 45 / 0.0001 AT4G17830 734 / 0.0 Peptidase M20/M25/M40 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042502 [exp] 682 / 0 AT1G44820 635 / 0.0 Peptidase M20/M25/M40 family protein (.1) Lus10038151 [exp] 673 / 0 AT1G44820 622 / 0.0 Peptidase M20/M25/M40 family protein (.1) Lus10026565 [exp] 527 / 0 AT4G38220 616 / 0.0 aquaporin interactor, Peptidase M20/M25/M40 family protein (.1.2) Lus10013848 [exp] 498 / 4e-174 AT4G38220 576 / 0.0 aquaporin interactor, Peptidase M20/M25/M40 family protein (.1.2) Lus10040090 [exp] 47 / 4e-05 AT4G17830 740 / 0.0 Peptidase M20/M25/M40 family protein (.1.2) Lus10030957 [exp] 46 / 4e-05 AT4G17830 734 / 0.0 Peptidase M20/M25/M40 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0035 [poplar] [flax] Peptidase_MH PF04389 [poplar] [flax] Peptidase_M28 Peptidase family M28 CL0035 [poplar] [flax] PF07687 [poplar] [flax] M20_dimer Peptidase dimerisation domain
Representative CDS sequence Show only first row Show all	>Potri.002G085400.1 pacid=42779800 polypeptide=Potri.002G085400.1.p locus=Potri.002G085400 ID=Potri.002G085400.1.v4.1 annot-version=v4.1 ATGATCAACGCCCGTCACTTTCCCCTCCTCTCGTTCGCACTCCTCCTCCTCTCTCTCCGCCTCTCCCTCGCCACGTCACCACCACAACAAGACCCAGAAA CCCCAGTCGCCCGGTTCCAAAAATACCTGAGATTCAACACCGCCCATCCAAACCCAAACTACACAGCTCCAGTCTCTTTTCTAACCTCCTTAGCCACTTC TCTAGGTCTCAAAACCCAGACTCTCGAATTCATACCCAACAAACCAACTCTTCTCATAACCTGGCAAGGCTCAAACCCATCTCTCCATTCACTCCTCTTC AACTCCCACCTCGACTCTGTCCCAGCTGAACCTTCTAAATGGACCCATCCTCCTTTCTCAGCCACGCTAACCCCAGAAGGAAAAATCTTTGCACGCGGAG CTCAAGACGACAAGTGCATAGCAATTCAGTACTTAGAAGCAATCCGCAACTTAAAAGCAAGAAACTTTGTCCCTACAAGGACACTACACATTTCTTTTGT TCCTGATGAGGAGATTGGTGGGATTGACGGGTCTGATAAGTTTGTCAAGTCTAAAGAGTTTAAAGATTTGGATGTTGGGTTTGTTTTGGATGAAGGGCAG GCTTCAGTTAACGATGAATTTAGAGTTTTTTATGCTGATAGGTCGCCTTGGAATTTGATTATTAAGGCTAAAGGAGTGCCTGGGCATGGGTCGAGAATGT ATGATAACGGAGCTATGGAGAATTTGATGGATAGTATCGAGGTTATCAACAGGTTTAGAGATAGTCAGTTTGATATTGTTAAGGCTGGAAAAGCTTCGAA CTCGGAAGTTATCTCAGTTAATCCTGTTTTCTTGAAAGCTGGGATTCCTTCCCCAACTGGTTTTGTGATGAATATGCAACCTTCGGAGGCAGAAGCAGGG TTTGATCTTAGATTGCCTCCTACAGCGGACCCAGATCTTGTGAAGAAAAGAATTGCTGAAGAGTGGGCGCCAGCTGTACGAAACATGACATACGAGATAA TTGAGAAAGGACCCTTGAGAGATTATATGGGACGCCCATTAATGACAGCAACAGATGATTCGAACCCATGGTGGTCTGTTTTCAAGCAAGCCATTGCAGC AGCTGGAGGAAAACTTGCGAAGCCTGAAATATTGTCTTCAACTACTGATGCACGGTTCATGAGACAGTTGGGGATTCCCGCTTTTGGATTCTCTCCAATG ACAAATACCCCTATTTTATTGCATGACCATAACGAGTTCTTGAAAGATACCATATTCTTGAAAGGAATTGAGGTTTATGAACATATAATTCACGCGTTGA GTTCGTTTGAGGAAGCTAATTCAATATAG
AA sequence Show only first row Show all	>Potri.002G085400.1 pacid=42779800 polypeptide=Potri.002G085400.1.p locus=Potri.002G085400 ID=Potri.002G085400.1.v4.1 annot-version=v4.1 MINARHFPLLSFALLLLSLRLSLATSPPQQDPETPVARFQKYLRFNTAHPNPNYTAPVSFLTSLATSLGLKTQTLEFIPNKPTLLITWQGSNPSLHSLLF NSHLDSVPAEPSKWTHPPFSATLTPEGKIFARGAQDDKCIAIQYLEAIRNLKARNFVPTRTLHISFVPDEEIGGIDGSDKFVKSKEFKDLDVGFVLDEGQ ASVNDEFRVFYADRSPWNLIIKAKGVPGHGSRMYDNGAMENLMDSIEVINRFRDSQFDIVKAGKASNSEVISVNPVFLKAGIPSPTGFVMNMQPSEAEAG FDLRLPPTADPDLVKKRIAEEWAPAVRNMTYEIIEKGPLRDYMGRPLMTATDDSNPWWSVFKQAIAAAGGKLAKPEILSSTTDARFMRQLGIPAFGFSPM TNTPILLHDHNEFLKDTIFLKGIEVYEHIIHALSSFEEANSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G44820			Peptidase M20/M25/M40 family p...		Potri.002G085400 [exp]	0	1
AT1G77850	ARF	ARF17	auxin response factor 17 (.1)		Potri.005G171300 [exp]	1.00	0.8895
AT5G06410			DNAJ heat shock N-terminal dom...		Potri.006G200900 [exp]	2.44	0.8720
AT4G21800		QQT2	quatre-quart2, P-loop containi...		Potri.008G103000 [exp]	2.82	0.8590
AT3G02065			P-loop containing nucleoside t...		Potri.014G140100 [exp]	2.82	0.8725
AT4G30230			unknown protein		Potri.006G168400 [exp]	3.46	0.8342
AT4G08940			Ubiquitin carboxyl-terminal hy...		Potri.002G097900 [exp]	11.74	0.8516
AT4G07950			DNA-directed RNA polymerase, s...		Potri.012G015900 [exp]	12.84	0.8356
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Potri.016G089000 [exp]	13.07	0.8406
AT1G30480		DRT111	DNA-DAMAGE-REPAIR/TOLERATION P...		Potri.011G098100 [exp]	13.96	0.8320	DRT111.1
AT5G38830			Cysteinyl-tRNA synthetase, cla...		Potri.010G122500 [exp]	14.00	0.8266

Compare expression of checked genes

Potri.002G085400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.