Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21920 397 / 6e-136 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) AT1G77660 380 / 2e-129 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) AT4G17080 268 / 2e-84 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) AT2G35170 259 / 2e-81 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) AT1G21980 94 / 2e-20 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT1G77740 90 / 5e-19 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT2G41210 85 / 2e-17 PIP5K5 phosphatidylinositol- 4-phosphate 5-kinase 5 (.1) AT3G07960 84 / 4e-17 PIP5K6 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT3G56960 83 / 1e-16 PIP5K4 phosphatidyl inositol monophosphate 5 kinase 4 (.1) AT1G60890 82 / 2e-16 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G175800 [exp] 601 / 0 AT1G21920 372 / 3e-126 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.002G140000 [exp] 281 / 8e-90 AT4G17080 373 / 1e-124 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.014G052300 [exp] 273 / 5e-87 AT4G17080 348 / 2e-115 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.001G149400 [exp] 271 / 1e-85 AT4G17080 395 / 2e-132 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.003G085000 [exp] 271 / 3e-85 AT4G17080 417 / 5e-141 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.002G088100 [exp] 89 / 9e-19 AT1G21980 1136 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.005G172800 [exp] 86 / 2e-17 AT1G21980 1139 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.019G015768 [exp] 86 / 2e-17 AT1G21980 947 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.016G036800 [exp] 84 / 5e-17 AT3G56960 1214 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028062 [exp] 483 / 2e-169 AT1G77660 442 / 2e-153 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Lus10008325 [exp] 481 / 4e-168 AT1G77660 438 / 8e-152 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Lus10028158 [exp] 281 / 2e-89 AT4G17080 508 / 1e-176 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Lus10042858 [exp] 239 / 3e-73 AT4G17080 439 / 3e-150 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Lus10025636 [exp] 95 / 1e-20 AT1G21980 1170 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10018200 [exp] 95 / 2e-20 AT1G21980 1172 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10008651 [exp] 94 / 3e-20 AT3G07960 990 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10029661 [exp] 93 / 5e-20 AT1G21980 1115 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10002734 [exp] 91 / 3e-19 AT3G07960 990 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10039507 [exp] 88 / 2e-18 AT3G07960 942 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0251 [poplar] [flax] MORN PF02493 [poplar] [flax] MORN MORN repeat
Representative CDS sequence Show only first row Show all	>Potri.002G085900.1 pacid=42778229 polypeptide=Potri.002G085900.1.p locus=Potri.002G085900 ID=Potri.002G085900.1.v4.1 annot-version=v4.1 ATGGACGCTCAAAAAGGCAGCCAAACGAAGCTTACAAGAACTCAGTCTTCACTCCGTTCATCTCCCACTATCCGATCATCCATTCACAGCTTAACTTCTG TAGCCGAAGAGGACGTTATCAAAGCCCAGCAGCAACAACAGCAAAAACTAGAAGATGATTTAGAAGAACAGAAAAAAATAAAGCCGAACCGGTGTGGTTC AACCCCAAGAAGAACTGGTTCGACCCGGTTCACTGCAGTTTTCACTATGGTTTCGCTCATTTTTTTCACCTTTTTCTCTCTTTCCTTCTTTTTCTTCTTC TACTTGAGAAGAGAAGAAGTATCCACATCAGAGAATCTTTTATTGGCTTTGATTTTCATTGCCGTAACGCTGTTCTTTGCAAGCAAGAACAAGAACTTAA TCAACCAGAATATGATAGTTTTCAAGCAATTATGGGAAGTGAACACAAAAAGATTCAATCTTTGTACTTCAAGAACCAAATCAAAGCAAGTTCAATGGTT TATTGGAGACCCCAATGTTAACAACAACAATAAAGATAAGAAGTTAGAGAAGAGGATTATAAGAGAAGGAGTGGAATTTTATAGCAATGGGGATTTTTAT GAAGGAGAGTTTCATAAAGGGAAGTGTAATGGGAGTGGGGTTTATAATTTCTTTGTGAATGGGAGATATGAAGGTGATTGGGTTGATGGAAGATATGATG GGTATGGAATAGAGAGTTGGGCTAGAGGGAGTAGATATAGAGGGCAATATAGACAGGGTTTAAGGCATGGTTATGGAGTCTATAGGTTTTATACAGGGGA CTCTTATGCTGGTGAATGGTTCAATGGGCAGAGTCATGGTGTTGGAGTGCAGACTTGTGGTGATGGGAGTTGCTATGTTGGTGAATTCAAGTGTGCTGTT AAACATGGCCTTGGTGTTTACCATTTCAGAAACGGAGATAGATATGCTGGAGAATACTTTGGAGACAAAATGCACGGCTTTGGTGTTTATCACTTTGCCA ATGGCCACTGCTACGAGGGATCATGGCATGAAGGGCGGAAGCAAGGCTATGGCATGTATACCTTCCGTGGTGGCGACACTAGATGTGGGGAATGGGATGT TGGTAACCTCAGGACCTCTCTCCCCCCTATAACTGATCCAGTCCTTCGAGCTGTACAGTCTGCCAGAAGAACAGCAGAAAATGCCATTCACTTGCGCCGG GTGGATGAACTAGTGAACAGGGCAGTTCATGCCGCAAACAGGGCCGCAACGGCAGCTAGAGTTGCTGCTGTCAAAGCTGTTCAAAATCGGATGGATGGCA AATTTTGCGATACTAATGTTTGA
AA sequence Show only first row Show all	>Potri.002G085900.1 pacid=42778229 polypeptide=Potri.002G085900.1.p locus=Potri.002G085900 ID=Potri.002G085900.1.v4.1 annot-version=v4.1 MDAQKGSQTKLTRTQSSLRSSPTIRSSIHSLTSVAEEDVIKAQQQQQQKLEDDLEEQKKIKPNRCGSTPRRTGSTRFTAVFTMVSLIFFTFFSLSFFFFF YLRREEVSTSENLLLALIFIAVTLFFASKNKNLINQNMIVFKQLWEVNTKRFNLCTSRTKSKQVQWFIGDPNVNNNNKDKKLEKRIIREGVEFYSNGDFY EGEFHKGKCNGSGVYNFFVNGRYEGDWVDGRYDGYGIESWARGSRYRGQYRQGLRHGYGVYRFYTGDSYAGEWFNGQSHGVGVQTCGDGSCYVGEFKCAV KHGLGVYHFRNGDRYAGEYFGDKMHGFGVYHFANGHCYEGSWHEGRKQGYGMYTFRGGDTRCGEWDVGNLRTSLPPITDPVLRAVQSARRTAENAIHLRR VDELVNRAVHAANRAATAARVAAVKAVQNRMDGKFCDTNV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21920			Histone H3 K4-specific methylt...		Potri.002G085900 [exp]	0	1
AT1G14630			unknown protein		Potri.010G100700 [exp]	2.00	0.6742
AT3G54390	Trihelix		sequence-specific DNA binding ...		Potri.003G195300 [exp]	5.09	0.6463
AT1G75590			SAUR-like auxin-responsive pro...		Potri.005G237000 [exp]	9.79	0.6364
AT5G43310			COP1-interacting protein-relat...		Potri.010G070200 [exp]	16.24	0.6429
AT5G12330		LRP1	LATERAL ROOT PRIMORDIUM 1, Lat...		Potri.003G196100 [exp]	17.86	0.6142
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Potri.002G037500 [exp]	19.10	0.6372
AT5G09760			Plant invertase/pectin methyle...		Potri.007G107300 [exp]	19.44	0.5684
AT5G63530		ATFP3	ARABIDOPSIS THALIANA FARNESYLA...		Potri.012G101400 [exp]	20.71	0.6449
AT5G59790			Domain of unknown function (DU...		Potri.010G209600 [exp]	22.91	0.6048
AT2G32250	FAR1_related	FRS2	FAR1-related sequence 2 (.1.2....		Potri.016G018100 [exp]	27.54	0.5747

Compare expression of checked genes

Potri.002G085900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.