Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77670 726 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT2G22250 184 / 3e-53 ATAAT, AAT, MEE17 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) AT5G36160 120 / 6e-30 Tyrosine transaminase family protein (.1) AT2G20610 109 / 1e-25 RTY1, RTY, HLS3, ALF1, SUR1 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) AT4G28420 108 / 2e-25 Tyrosine transaminase family protein (.1.2) AT4G28410 107 / 4e-25 Tyrosine transaminase family protein (.1) AT2G24850 106 / 1e-24 TAT3 tyrosine aminotransferase 3 (.1) AT5G53970 103 / 1e-23 TAT7 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) AT4G23600 90 / 3e-19 JR2, CORI3, TAT1 JASMONIC ACID RESPONSIVE 2, CORONATINE INDUCED 1, Tyrosine transaminase family protein (.1.2.3) AT4G23590 89 / 8e-19 Tyrosine transaminase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G175400 [exp] 812 / 0 AT1G77670 728 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.005G175600 [exp] 428 / 4e-151 AT1G77670 395 / 1e-138 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.014G124100 [exp] 289 / 1e-93 AT1G77670 289 / 6e-94 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.007G088426 [exp] 181 / 2e-51 AT2G22250 643 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Potri.005G079200 [exp] 177 / 7e-50 AT2G22250 649 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Potri.017G014100 [exp] 112 / 7e-27 AT5G53970 528 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.007G137950 [exp] 106 / 5e-25 AT5G53970 504 / 2e-178 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G014200 [exp] 106 / 6e-25 AT5G36160 540 / 0.0 Tyrosine transaminase family protein (.1) Potri.007G137900 [exp] 101 / 4e-23 AT5G53970 457 / 4e-160 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004089 [exp] 687 / 0 AT1G77670 685 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10014710 [exp] 674 / 0 AT1G77670 680 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10018962 [exp] 274 / 4e-87 AT1G77670 289 / 2e-93 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10023080 [exp] 185 / 5e-53 AT2G22250 683 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Lus10032388 [exp] 184 / 2e-52 AT2G22250 681 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Lus10033820 [exp] 175 / 5e-50 AT1G77670 172 / 2e-49 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10033659 [exp] 119 / 2e-29 AT5G36160 481 / 3e-169 Tyrosine transaminase family protein (.1) Lus10017703 [exp] 119 / 3e-29 AT2G20610 486 / 1e-170 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10017704 [exp] 116 / 3e-28 AT5G53970 508 / 4e-180 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10033661 [exp] 113 / 3e-27 AT5G36160 499 / 1e-176 Tyrosine transaminase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00266 [poplar] [flax] Aminotran_5 Aminotransferase class-V
Representative CDS sequence Show only first row Show all	>Potri.002G086000.1 pacid=42779418 polypeptide=Potri.002G086000.1.p locus=Potri.002G086000 ID=Potri.002G086000.1.v4.1 annot-version=v4.1 ATGCGGAGTCAATGTATCTGGACGCCTTGTGAGGTGCTCACGCCACTGAGCTTTAAACCCTCAACATTCTTCACCTTTTCATTTTCAAAGCAATTGCTTC TACCTGACAAAAGTATTGCCGCTATTAGCTCTACAAGGAGAGGAATCTCTTCTTACCCTTCTCTCATGGCCTCCTCACCTTCCCTCAAAGATGCAGTTTC CACTCAAAACGAGTCAACCCAGAAGACCCAACAGCCGTTACAACAGGTTGCAAAGCGTCTGGAGAAGTTCAAAACCACAATATTCACACAGATGAGTTCA CTTGCCATCAAACATGGAGCGATAAATCTGGGCCAAGGCTTTCCCAATTTTGATGGTCCTGAGTTTGTCAAAGAAGCAGCCATCCAAGCTATTAAAGATG GGAAGAATCAATATGCTCGTGGATATGGGGTTCCAGATTTCAGCTCTGCCATTGCTGAGCGATTCAAGAAAGATACCGGGCTTGTGGTTGACCCTGAGAA AGAAATTACTGTTACATCTGGGTGCACCGAAGCTATAGCTGCAACTATGCTAGGCTTGATAAATCCTGGCGATGAAGTAATCCTCTTTGCTCCTTTCTAT GATTCATATGAAGCCACATTATCAATGGCCGGTGCAAAAATAAAATGTATCACATTGCACCCACCAGATTTTGCTGTTCCCATAGATGAGCTTAAATCAG CAATCACACAGGATACTCGTGCAGTTCTCATCAACACTCCACATAACCCAACTGGAAAGATGTTTTCTAGGGAGGAGCTTAGTACTATTGCATCGCTTTG CATTGAGAATGATGTGCTGGTTTTCACTGATGAAGTTTATGATAAATTGGCTTTTGAATTGGATCATATATCAATGGCCTCTCTTCCAGGAATGTATGAA CGGACTGTGACTTTGAATTCCTTAGGGAAGACATTCTCCTTGACAGGCTGGAAGATTGGCTGGGCAATAGCACCTCCTCACTTGACATGGGGAGTGCGAC AGGCACACTCTTTCCTTACTTTCGCCACCTCCACTCCTATGCAGTGGGCAGCTGCAGTTGCTCTCAGAGCCCCAGAATCCTACTTTGTTGAGCTAAAGAG GGATTATATGGCAAAGAAGGAAATATTGGTTGAGGGGTTGAAGGCTGTTGGTTTCAAAGTATTTCCATCAAGTGGTACTTACTTTGTTGTTGTTGATCAC ACCCCTTTCGGCCTGGAAAATGATATTGCATTTTGTGAGTATCTGATCAAGGAAGTCGGGGTTGTGGCAATTCCAACAAGTGTATTTTACTTGAACCCGG AAGATGGAAAGAATTTGGTGAGATTCACCTTCTGCAAAGATGAAGGAACTTTGAGGGCTGCAGTTGATAGGATGAAGGAGAAGCTGAAGAGAAAATGA
AA sequence Show only first row Show all	>Potri.002G086000.1 pacid=42779418 polypeptide=Potri.002G086000.1.p locus=Potri.002G086000 ID=Potri.002G086000.1.v4.1 annot-version=v4.1 MRSQCIWTPCEVLTPLSFKPSTFFTFSFSKQLLLPDKSIAAISSTRRGISSYPSLMASSPSLKDAVSTQNESTQKTQQPLQQVAKRLEKFKTTIFTQMSS LAIKHGAINLGQGFPNFDGPEFVKEAAIQAIKDGKNQYARGYGVPDFSSAIAERFKKDTGLVVDPEKEITVTSGCTEAIAATMLGLINPGDEVILFAPFY DSYEATLSMAGAKIKCITLHPPDFAVPIDELKSAITQDTRAVLINTPHNPTGKMFSREELSTIASLCIENDVLVFTDEVYDKLAFELDHISMASLPGMYE RTVTLNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAAAVALRAPESYFVELKRDYMAKKEILVEGLKAVGFKVFPSSGTYFVVVDH TPFGLENDIAFCEYLIKEVGVVAIPTSVFYLNPEDGKNLVRFTFCKDEGTLRAAVDRMKEKLKRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Potri.002G086000 [exp]	0	1
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.017G052232 [exp]	1.73	0.7742
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.017G052100 [exp]	5.47	0.7008
AT1G03940			HXXXD-type acyl-transferase fa...		Potri.019G118101 [exp]	6.24	0.7197
AT3G02870		VTC4	Inositol monophosphatase famil...		Potri.010G156300 [exp]	6.70	0.7025
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Potri.002G161000 [exp]	7.74	0.7187	Pt-UBC4.1
AT2G39980			HXXXD-type acyl-transferase fa...		Potri.010G192400 [exp]	8.36	0.6793
AT1G11330			S-locus lectin protein kinase ...		Potri.011G039200 [exp]	14.07	0.6890
AT4G11240		TOPP7	Calcineurin-like metallo-phosp...		Potri.001G098600 [exp]	15.42	0.6502	PP1.4
					Potri.008G164250 [exp]	18.11	0.6971
AT4G34770			SAUR-like auxin-responsive pro...		Potri.004G165800 [exp]	20.00	0.6503

Compare expression of checked genes

Potri.002G086000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.