Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35370 952 / 0 S-locus lectin protein kinase family protein (.1) AT4G32300 464 / 3e-151 SD2-5 S-domain-2 5 (.1) AT2G19130 360 / 4e-111 S-locus lectin protein kinase family protein (.1) AT1G34300 348 / 5e-107 lectin protein kinase family protein (.1) AT4G00340 338 / 5e-103 RLK4 receptor-like protein kinase 4 (.1) AT5G24080 286 / 1e-87 Protein kinase superfamily protein (.1) AT1G65800 276 / 3e-80 ARK2 receptor kinase 2 (.1) AT1G61480 274 / 1e-79 S-locus lectin protein kinase family protein (.1) AT1G65790 270 / 5e-78 ARK1 receptor kinase 1 (.1) AT1G11330 270 / 8e-78 S-locus lectin protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G013797 [exp] 847 / 0 AT5G35370 751 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.018G027300 [exp] 462 / 2e-150 AT4G32300 1012 / 0.0 S-domain-2 5 (.1) Potri.006G254600 [exp] 449 / 4e-145 AT4G32300 965 / 0.0 S-domain-2 5 (.1) Potri.019G119200 [exp] 357 / 4e-110 AT2G19130 874 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G121000 [exp] 349 / 4e-107 AT2G19130 863 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G115700 [exp] 341 / 4e-104 AT1G34300 939 / 0.0 lectin protein kinase family protein (.1) Potri.015G026300 [exp] 337 / 2e-102 AT5G24080 684 / 0.0 Protein kinase superfamily protein (.1) Potri.019G086400 [exp] 333 / 3e-101 AT1G34300 904 / 0.0 lectin protein kinase family protein (.1) Potri.013G149500 [exp] 333 / 3e-101 AT2G19130 838 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028067 [exp] 955 / 0 AT5G35370 844 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10025617 [exp] 575 / 0 AT5G35370 469 / 2e-156 S-locus lectin protein kinase family protein (.1) Lus10002917 [exp] 476 / 2e-155 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10000249 [exp] 472 / 7e-154 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10043391 [exp] 431 / 1e-138 AT4G32300 795 / 0.0 S-domain-2 5 (.1) Lus10042266 [exp] 330 / 3e-100 AT2G19130 775 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10029802 [exp] 327 / 5e-99 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10032944 [exp] 324 / 1e-97 AT2G19130 371 / 1e-115 S-locus lectin protein kinase family protein (.1) Lus10024195 [exp] 318 / 8e-96 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1) Lus10024348 [exp] 319 / 9e-96 AT2G19130 378 / 4e-118 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF01453 [poplar] [flax] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Potri.002G086500.4 pacid=42778990 polypeptide=Potri.002G086500.4.p locus=Potri.002G086500 ID=Potri.002G086500.4.v4.1 annot-version=v4.1 ATGGGAACCTTGTTGTTATTCTTGTCCACCAGTTTTTTGTTCCATGTTCTTGTATCTGGTGTTACTTACACTGAATTAATCTTTCCGAATTTCACTGCTT CAAGCTTTAAATTTGTTGACAACGCAGGGGCTTTCCTGTTCTCACGTAATGGAACATTCAAAGTTGCTATCTTCAACCCTGGAGTACAAAAGGCCCACTA TTACTTGTGTGTTATGCATGCAGTGTCTGGCACCGTCATCTGGTCTGCTAATCGTGATGGTCCTATCTCAAGTTCTGGTAAAATGACTCTCACAGCGATT GGAATTACCGTTGCCGAGCAAGACGGTAATGACAAATGGTCAACTCCACCACTAAGATCATCAGTAAATGCACTGCAGCTAACTGAGATGGGCAATCTTG TTTTACTTGACCAGTTTAATCATTCTCTTTGGGAGAGCTTCCACTATCCAACAGACACGATTGTCATGGGACAGCACTTACTTGAGGACACAATTCTATC CAGTGCTGTATCAGATGATGACTTGTCAACCGGTGATTACAAGCTGACTGTCAGTGATTCAGATGTCTTGCTGCAATGGTATGGGCAGACATACTGGAAA TTATCTATGGATGCCCGAGCTTACAGGAACTCTAATTATATAAATGAATATATGGAAATTAATGGAACAGGTCTCTTTCTCTTTGGTCGTAATGGATCAG CAGTTGTGACACAGGTGACCTTGCCTCCATCCAAGTTCCGAATTGCTCAGTTGGATGCTTCTGGCCAGTTCATGATCAGTAGTTTTCTGGGTACTGACAG GAAACAGGAATTTGTAGGGCCAATTGATGGTTGTCGAATTCCATTTGTTTGTGGCAGAATTGGACTGTGTACTGGCACTACATCCAATGGCCCAATTTGT TCATGCCCCCAAGGTTTCCTAAGAGGCTCACAAAATTCGAGCGGCTGCGCGCCAAGTGATGGTTATTCTTTGCCATTGGCTTGCAATTCAGCCAAGAATG TTTCTCAGTTGAATTCATCTGATGTTTCTTATCTGAGGCTTGGCTATGGTATGAGTTACTTCTCTATTGATTTCTCTGAGCCTATAGAATATGGTGTGAA TTTGTCAGTCTGTCAAGATGTCTGCACTACTGACTGTTCTTGTTTGGGAATTTATTATCAAAATTCTTCTGGATCTTGCTATGCATTTGAAAATGAATTA GGTTCCATTATAGCAAGTACTACAGATGATGAGGATCATTTGGGCTACATTAAGACTTTAGGTGGAAATGATTCACCTTCCAACAATGGGTCTACTAATC AAAGACAAGACTTCCCTTTATTTGCTCTGGTGCTGTTACCTTTTACTGGGTTCTTCATCATAGTTGTTTTCGGTTTCCTCTGGTGGAGAAAACAGAGTTT TTTGAAGATTAAAGAGACAAAACTAGGCCATGCAAACTCGATTTCTTCAGGAGATCTGGACGCCTTCTACATCCCTGGCTTACCACAACGGTTTGACTAT GAAGAGCTCGAGGTAGCTACTGATAATTTTAAGACCAAGATAGGGTCTGGTGGGTTCGGTGTTGTATACAAGGGTACGCTGCCTGATAAATCAGCTGTAG CAGTAAAGAAGATAACCAATTTAGGAGTCCAAGGGAAAAAAGATTTTTGCACTGAAATTGCAGTAATCGGAAATATACACCACGTCAACCTGGTGAAACT GAGAGGATTTTGTGCCCAAGGGAGACAGCGCCTTTTAGTTTATGAGTATATGAATCGTGGCTCACTAGACAGGACCCTCTTTGGCAGTGGGCCTGTCTTG GAATGGCAAGAGAGGTTTGAGATAGCGCTCGGAACTGCACGTGGGCTTGCATACTTGCATTCTGGGTGTGAACAAAAAATCATTCATTGTGATGTCAAGC CAGAGAATATTCTTTTGCATGACTGTTTTCAGGCAAAGATATCTGATTTTGGCCTCTCAAAGCTTCTAGGCCCTGAACAATCTAGTTTATTTACAACAAT GAGGGGTACCCGTGGCTATCTTGCACCTGAATGGTTAACTAATTCTGCAATCTCAGAAAAAACTGACGTTTACAGTTTTGGAATGGTACTGCTTGAACTT GTAAGTGGAAGAAAAAATTGCAGCATGGATGCCAGTAACAGTGGTTGTGGCCAATCGATTTCATCATCTGGATCTGGATTTGTTTATTTCCCACTATTTG CATTGGAGATGCATGAGCAAGGGAATTACTTGGAGCTTGCTGACCCAAGGCTAGAGGGACGGGTAACAAGTGAAGAAGCGGAGAGATTAGTACGTGTTGC TCTATGTTGTGTTCAAGAGGAGCCATTATTGAGGCCTACAATGGTTAGTGTTGTTGGAATGCTGGAAAGCAGCACTCCTTTAAGCCAGCCAAGAATAAAA TCTCTTAATTTCTTGCGCTTTTATGGACGTAGATTCACTGAGGCTTCCATGATTGGGGAGGAAAATGAACAGAGTGACATTATCTTGTATCCAGAAGCAA ATACAAGTGCTACAAGCACAACAAATGGCTCACATGCTTGTTTCTCCTACATCTCTTCACAGCAGATCTCAGGCCCAAGATAG
AA sequence Show only first row Show all	>Potri.002G086500.4 pacid=42778990 polypeptide=Potri.002G086500.4.p locus=Potri.002G086500 ID=Potri.002G086500.4.v4.1 annot-version=v4.1 MGTLLLFLSTSFLFHVLVSGVTYTELIFPNFTASSFKFVDNAGAFLFSRNGTFKVAIFNPGVQKAHYYLCVMHAVSGTVIWSANRDGPISSSGKMTLTAI GITVAEQDGNDKWSTPPLRSSVNALQLTEMGNLVLLDQFNHSLWESFHYPTDTIVMGQHLLEDTILSSAVSDDDLSTGDYKLTVSDSDVLLQWYGQTYWK LSMDARAYRNSNYINEYMEINGTGLFLFGRNGSAVVTQVTLPPSKFRIAQLDASGQFMISSFLGTDRKQEFVGPIDGCRIPFVCGRIGLCTGTTSNGPIC SCPQGFLRGSQNSSGCAPSDGYSLPLACNSAKNVSQLNSSDVSYLRLGYGMSYFSIDFSEPIEYGVNLSVCQDVCTTDCSCLGIYYQNSSGSCYAFENEL GSIIASTTDDEDHLGYIKTLGGNDSPSNNGSTNQRQDFPLFALVLLPFTGFFIIVVFGFLWWRKQSFLKIKETKLGHANSISSGDLDAFYIPGLPQRFDY EELEVATDNFKTKIGSGGFGVVYKGTLPDKSAVAVKKITNLGVQGKKDFCTEIAVIGNIHHVNLVKLRGFCAQGRQRLLVYEYMNRGSLDRTLFGSGPVL EWQERFEIALGTARGLAYLHSGCEQKIIHCDVKPENILLHDCFQAKISDFGLSKLLGPEQSSLFTTMRGTRGYLAPEWLTNSAISEKTDVYSFGMVLLEL VSGRKNCSMDASNSGCGQSISSSGSGFVYFPLFALEMHEQGNYLELADPRLEGRVTSEEAERLVRVALCCVQEEPLLRPTMVSVVGMLESSTPLSQPRIK SLNFLRFYGRRFTEASMIGEENEQSDIILYPEANTSATSTTNGSHACFSYISSQQISGPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G35370			S-locus lectin protein kinase ...		Potri.002G086500 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Potri.019G036850 [exp]	1.00	0.9304
AT1G73100		SDG19, SUVH3	SET DOMAIN PROTEIN 19, SU(VAR)...		Potri.001G036800 [exp]	5.09	0.8825	SUVH3.4,SDG950
AT5G45190			Cyclin family protein (.1.2)		Potri.007G067100 [exp]	8.71	0.8730
AT1G76680		OPR1, ATOPR1	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Potri.003G004200 [exp]	8.77	0.8610
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.017G078500 [exp]	9.64	0.8786	HMGB906,ATHMG.1
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Potri.008G042300 [exp]	12.32	0.8584
AT4G20325			unknown protein		Potri.006G280600 [exp]	13.96	0.8697
AT5G01720			RNI-like superfamily protein (...		Potri.006G105400 [exp]	14.83	0.8479
AT5G04940		SUVH1	SU(VAR)3-9 homolog 1 (.1), SU(...		Potri.019G087900 [exp]	17.74	0.8448	SDG907,SUVH3.1
AT5G49840			ATP-dependent Clp protease (.1...		Potri.004G229400 [exp]	19.13	0.8642

Compare expression of checked genes

Potri.002G086500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.