Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08640 432 / 7e-153 ATFLS1, FLS flavonol synthase 1 (.1.2) AT5G63590 325 / 7e-111 ATFLS3, FLS3, FLS flavonol synthase 3 (.1) AT5G63600 301 / 3e-101 ATFLS5, FLS5 flavonol synthase 5 (.1.2) AT5G43935 277 / 2e-92 ATFLS6, FLS6 flavonol synthase 6 (.1) AT4G22880 258 / 7e-84 TT18, TDS4, ANS, LDOX TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) AT5G63595 240 / 5e-78 ATFLS4, FLS4 flavonol synthase 4 (.1) AT2G38240 228 / 2e-72 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 228 / 3e-72 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 220 / 9e-69 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G63580 211 / 3e-67 ATFLS2, FLS2 flavonol synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G014454 [exp] 471 / 3e-168 AT5G08640 454 / 1e-161 flavonol synthase 1 (.1.2) Potri.004G139700 [exp] 458 / 3e-163 AT5G08640 446 / 3e-158 flavonol synthase 1 (.1.2) Potri.004G139600 [exp] 445 / 5e-158 AT5G08640 470 / 7e-168 flavonol synthase 1 (.1.2) Potri.003G119100 [exp] 251 / 2e-81 AT4G22880 530 / 0.0 TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) Potri.001G113100 [exp] 251 / 2e-81 AT4G22880 530 / 0.0 TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) Potri.006G101200 [exp] 228 / 2e-72 AT5G05600 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G069300 [exp] 224 / 5e-71 AT5G05600 528 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G188000 [exp] 221 / 8e-70 AT5G05600 511 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101100 [exp] 220 / 3e-69 AT5G05600 462 / 1e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028068 [exp] 530 / 0 AT5G08640 429 / 1e-151 flavonol synthase 1 (.1.2) Lus10025620 [exp] 521 / 0 AT5G08640 424 / 2e-149 flavonol synthase 1 (.1.2) Lus10025619 [exp] 306 / 2e-103 AT5G08640 349 / 5e-120 flavonol synthase 1 (.1.2) Lus10006709 [exp] 239 / 2e-75 AT4G22880 573 / 0.0 TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) Lus10014134 [exp] 228 / 6e-72 AT4G22880 559 / 0.0 TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) Lus10005037 [exp] 222 / 2e-69 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10004808 [exp] 208 / 1e-64 AT5G05600 457 / 5e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10030185 [exp] 207 / 2e-64 AT4G10490 442 / 3e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037292 [exp] 208 / 4e-64 AT4G16330 416 / 5e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10030995 [exp] 202 / 3e-62 AT1G17020 339 / 2e-115 senescence-related gene 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.002G086700.1 pacid=42779640 polypeptide=Potri.002G086700.1.p locus=Potri.002G086700 ID=Potri.002G086700.1.v4.1 annot-version=v4.1 ATGGAGGCAGAAAGAGTACAAAACATTGCATCTACATTCGAAGATACAATCCCGGAAGCGTTTATCAGATCTGAGCATGAGCAACCTGCAATCACCACCG TTCATGGGGTCAACCTTGATGTCCCCGTCATCGATGTAAGCGACCCGGATGAGGAAAAGATCACCCGTTTGATCGCTGATGCTAGCCGGGAGTGGGGCAT GTTCCAAATTGTGAACCATGGCATACCGAGTGAGGTCATAAGCAAGCTTCAGAGTGTGGGTAGAGCCTTTTTTGAGCTCCCACAAGTAGAGAAGGAACTC TATGCCAAGCCACCAGGGGCTAAGTCTATTGAAGGATATGGAACCTTTCTTCAAAAAGAAGTGGAGGGCAAGAAAGGTTGGGTTGATCATTTATTCCACA GGATATGGCCTCCTCCAGCCATTAATTACCGGTTCTGGCCAAAAAATCCACCTCTATACAGGGAAGCCAACGAGGAATACGTAAAGTATCTGCACGGGGT TGTAGACAAACTCTTCAAGAGTCTGTCGTTAGACTTAGGGCTTGAAGAGCATGAGCTCAAAGAAGCTGTGGGCGGAGATGAGATGACATACCTTCTCAAA ATAAACTACTATCCACCTTGCCCACGTCCTGATCTAGCTCTTGGGGTGGTGGCTCACACTGACATGTGCTCCATAACAATTCTTCTTCCCAATGATATTC AGGGCCTCCAGGCCTGCAGAGATGGACAGTGGTATTGTGTCAAGTACATACCAAATGCATTAGTCATCCACATCGGCGACCAGATTAAGATTTTGAGCAA TGGGAAGTATAAGAGTGTGTTCCACAGAACCACAGTAACCAAAGATAAGACAAGAATGTCATGGCCTGTGTTCTTGGAGCCTCCACCTGACCTCGCTGTA GGGCCTCATCCCAAGCTCGTTAATGAAAAGAATCCCCCCAAGTACAAGACCAAGAAGTATGGTGATTATTGCTATTGTAAGCTCAACAAGATTCCACAAT AG
AA sequence Show only first row Show all	>Potri.002G086700.1 pacid=42779640 polypeptide=Potri.002G086700.1.p locus=Potri.002G086700 ID=Potri.002G086700.1.v4.1 annot-version=v4.1 MEAERVQNIASTFEDTIPEAFIRSEHEQPAITTVHGVNLDVPVIDVSDPDEEKITRLIADASREWGMFQIVNHGIPSEVISKLQSVGRAFFELPQVEKEL YAKPPGAKSIEGYGTFLQKEVEGKKGWVDHLFHRIWPPPAINYRFWPKNPPLYREANEEYVKYLHGVVDKLFKSLSLDLGLEEHELKEAVGGDEMTYLLK INYYPPCPRPDLALGVVAHTDMCSITILLPNDIQGLQACRDGQWYCVKYIPNALVIHIGDQIKILSNGKYKSVFHRTTVTKDKTRMSWPVFLEPPPDLAV GPHPKLVNEKNPPKYKTKKYGDYCYCKLNKIPQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Potri.002G086700 [exp]	0	1
AT5G60910	MADS	FUL, AGL8	FRUITFULL, AGAMOUS-like 8 (.1....		Potri.004G115400 [exp]	1.00	0.9586
					Potri.014G069900 [exp]	2.23	0.9533
AT1G24430			HXXXD-type acyl-transferase fa...		Potri.010G053800 [exp]	4.47	0.9568
AT2G48090			unknown protein		Potri.014G137850 [exp]	5.47	0.9542
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Potri.007G115200 [exp]	7.07	0.9389	MADS1.5
AT4G24975			Plant self-incompatibility pro...		Potri.017G144361 [exp]	7.14	0.8804
					Potri.012G121044 [exp]	8.12	0.9360
AT2G47810	CCAAT	NF-YB5	"nuclear factor Y, subunit B5"...		Potri.008G210300 [exp]	8.94	0.9297
AT1G20990			Cysteine/Histidine-rich C1 dom...		Potri.005G258800 [exp]	10.00	0.9281
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.007G024400 [exp]	10.67	0.9495

Compare expression of checked genes

Potri.002G086700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.