Plant FIBer expression Database

Potri.002G086800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G41705 416 / 1e-142 camphor resistance CrcB family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G174600
[exp]
686 / 0 AT2G41705 414 / 9e-142 camphor resistance CrcB family protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025622
[exp]
478 / 6e-167 AT2G41705 432 / 6e-149 camphor resistance CrcB family protein (.1.2)
Lus10028072
[exp]
472 / 2e-164 AT2G41705 420 / 5e-144 camphor resistance CrcB family protein (.1.2)
Lus10028071
[exp]
344 / 2e-115 AT2G41705 298 / 1e-97 camphor resistance CrcB family protein (.1.2)
Lus10025621
[exp]
150 / 1e-43 AT2G41705 133 / 1e-37 camphor resistance CrcB family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0184 DMT PF02537 CRCB CrcB-like protein, Camphor Resistance (CrcB)
Representative CDS sequence
>Potri.002G086800.2 pacid=42777345 polypeptide=Potri.002G086800.2.p locus=Potri.002G086800 ID=Potri.002G086800.2.v4.1 annot-version=v4.1
ATGGATCATGAAACTAATGAGGCGGAACCCGATCTGAGTGGCTCATTTTGTCAGACAAGCAGTGTGGGCTCTCCAGTGAGTCGATGCTCTTTAAGTTTAC
CACGCAGCTTATCCTTCCAGGTAGATGATGATATTGAAAGTGAAAATGTGTCAGAGACAGGTGATATTGGTGACAGGGCTCTGCACAGCAAGAGGCACAG
TGAAAGTGGCAGCATCAGGTTATCGGACAAGGGATTAGAAAATGGTATGTCGGTTCCCATTTCAGAGGGCTCTGCACAGCATGATTCCACAGCTTTGAAT
ACAAGATCCCCAATGTCACTTTTGCCAGAAGAAATCATATCTCCTATATCGATTGATGTGTTGGTCTGCTCCAAGGAAAAACAAGAAGACAAAGAGAAAG
CATTTGCGTTGCCACCATTACTCGAGTATATGTCCTGTCTTGTGTATCTGGCAGTTTTTGGAATTCTTGGGGTTTTAACGAGGTACAAACTACAGAAACT
CTTTGGCCCTGGTGTTGCTGGGGTGACAAGCGACAACTACCCGCTATATCTTGACCTACCTTCCAATATGGTGGGGTCGTTCTTGATGGGATGGTGGGGT
GTTGTTTTCAAAGGAGATATATCCAGAGTGTCTGATCATTTGGCTATTGGATTAACCACTGGTTACTTAGGAAGTCTCACAACTTTTAGTGGTTGGAATC
AGAAAATGCTTGATCTCAGTGTTGATGGCCATTGGGTGTTTTCTTTTGTTGGCTTTCTCATAGGGTTATTCCTTGCAGCATACGCCATAAAATTGGGTGT
TGGTACGGCGAAATGTTTCAAGTCATTTCTCGAGAGGTCAAACAGAAGTTCAGATTTAGCCGGTTGGAGGGTGGACAACTGCTATCATCATTTGGGAGTC
CTGGTGGTATTGGTGGTAATACTAGGCCTTTTATGGAGCGTGAGCTGGGCAATGCTCAAGAAGGAGTATAACCACGACAGTGGTGGGGCTCAGCTATGGC
TGGCTTGCATAGTTGCACCCCCAGGGGTGTGGATCAGGTGGTTCTTAGCACGGCTCAATGGTCGTGGGTTGGGGAAGGCGGGTTCTCTGAAATGGGTTCC
ATTTGGAACCCTTATTGCAAATGTTTCTGCAGCTTGTATCATGGCAGCATTGTCTACTGTGAAGAAAGCGGTGCATACCAAAACCTGTGAGACTATTTCA
ACAGGCATACAGTTAGGATTTTTGGGTTGTTTAAGTACTGTCTCCACTTTCATTGCCGAGTACAACGCCATGGAAGAAAGCCAGAAAAACTGGAGAGCTT
ATGCATATGCCCTGATGACAATAGCTGTCTCATTTGGCTTGGGGATCCTAATATACTCTGTACCTGTTTGGACCAGGGGATACAAATAG
AA sequence
>Potri.002G086800.2 pacid=42777345 polypeptide=Potri.002G086800.2.p locus=Potri.002G086800 ID=Potri.002G086800.2.v4.1 annot-version=v4.1
MDHETNEAEPDLSGSFCQTSSVGSPVSRCSLSLPRSLSFQVDDDIESENVSETGDIGDRALHSKRHSESGSIRLSDKGLENGMSVPISEGSAQHDSTALN
TRSPMSLLPEEIISPISIDVLVCSKEKQEDKEKAFALPPLLEYMSCLVYLAVFGILGVLTRYKLQKLFGPGVAGVTSDNYPLYLDLPSNMVGSFLMGWWG
VVFKGDISRVSDHLAIGLTTGYLGSLTTFSGWNQKMLDLSVDGHWVFSFVGFLIGLFLAAYAIKLGVGTAKCFKSFLERSNRSSDLAGWRVDNCYHHLGV
LVVLVVILGLLWSVSWAMLKKEYNHDSGGAQLWLACIVAPPGVWIRWFLARLNGRGLGKAGSLKWVPFGTLIANVSAACIMAALSTVKKAVHTKTCETIS
TGIQLGFLGCLSTVSTFIAEYNAMEESQKNWRAYAYALMTIAVSFGLGILIYSVPVWTRGYK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G41705 camphor resistance CrcB family... Potri.002G086800
[exp]
0 1
AT3G24240 Leucine-rich repeat receptor-l... Potri.003G175700
[exp]
4.00 0.9368
AT1G16310 Cation efflux family protein (... Potri.010G172700
[exp]
4.69 0.9596
AT4G17340 TIP2;2, DELTA-T... tonoplast intrinsic protein 2;... Potri.001G157000
[exp]
5.74 0.9527 TIP2.6
AT5G19890 Peroxidase superfamily protein... Potri.003G214500
[exp]
6.00 0.9538 PRX1.10
AT1G28130 GH3.17 Auxin-responsive GH3 family pr... Potri.003G161300
[exp]
6.00 0.9297 8
AT1G54120 unknown protein Potri.001G167600
[exp]
8.00 0.9315
AT5G54510 DFL1, GH3.6 DWARF IN LIGHT 1, Auxin-respon... Potri.011G129700
[exp]
8.77 0.8997 GH3-5,DFL1.2
AT3G52970 CYP76G1 "cytochrome P450, family 76, s... Potri.005G030100
[exp]
9.16 0.9467 CYP76G5
AT5G24270 ATSOS3, CBL4, S... CALCINEURIN B-LIKE PROTEIN 4, ... Potri.015G013100
[exp]
9.48 0.9143
AT5G53110 RING/U-box superfamily protein... Potri.015G017800
[exp]
10.39 0.9364

Potri.002G086800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.