Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17870 89 / 1e-21 ATCSP3 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) AT2G21060 86 / 8e-21 ATCSP4, ATGRP2B COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) AT4G36020 86 / 2e-20 CSDP1 cold shock domain protein 1 (.1) AT4G38680 76 / 2e-17 ATCSP2, CSDP2, GRP2 COLD SHOCK DOMAIN PROTEIN 2, ARABIDOPSIS THALIANA COLD SHOCK PROTEIN 2, glycine rich protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G174300 [exp] 144 / 7e-44 AT2G17870 92 / 1e-22 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) Potri.009G132000 [exp] 98 / 1e-25 AT2G21060 103 / 1e-27 COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) Potri.004G172600 [exp] 96 / 9e-25 AT2G21060 102 / 3e-27 COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) Potri.005G112800 [exp] 65 / 7e-13 AT2G17870 86 / 1e-19 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) Potri.007G057100 [exp] 64 / 2e-12 AT4G36020 127 / 3e-35 cold shock domain protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028073 [exp] 118 / 1e-33 AT4G36020 115 / 3e-31 cold shock domain protein 1 (.1) Lus10025623 [exp] 110 / 7e-31 ND 81 / 8e-20 Lus10005066 [exp] 92 / 1e-23 AT2G17870 122 / 1e-35 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) Lus10027839 [exp] 92 / 1e-23 AT2G21060 110 / 6e-31 COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) Lus10025058 [exp] 89 / 3e-23 AT2G21060 112 / 6e-33 COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) Lus10034487 [exp] 71 / 2e-15 AT2G21060 110 / 7e-31 COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) Lus10028449 [exp] 70 / 1e-14 AT4G36020 158 / 3e-47 cold shock domain protein 1 (.1) Lus10041902 [exp] 69 / 3e-14 AT4G36020 159 / 2e-47 cold shock domain protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0511 [poplar] [flax] Retroviral_zf PF00098 [poplar] [flax] zf-CCHC Zinc knuckle CL0021 [poplar] [flax] OB PF00313 [poplar] [flax] CSD 'Cold-shock' DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G086900.1 pacid=42776776 polypeptide=Potri.002G086900.1.p locus=Potri.002G086900 ID=Potri.002G086900.1.v4.1 annot-version=v4.1 ATGGCAGAGACCAAGAGATCCACTGGCACTGTCAAGTGGTTCAGCGCACAGAAAGGTTTTGGCTTCATTGCTCCCGATGACGGCGGAGAGGATCTGTTCG TCCACCAGACGTCGATCCAATCCGACGGCTTTCGTACCCTCTCCGACGGACAGCCCGTGGAGTTCTCTGTCGGTTCAGGAGAAGACGGCCGCGCCAAGGC CGCTGATGTCGTGGGAGCCTCCAGATCTCGCCGTCCTCCTCGTGGAGGCCGCGGTGGAGGTGGCGGGAGAGGGTACTACAGCGGAAGGGGACGAGGCGGT GGTTATGAGAGAGGCGGCCACTCAAGGGGTAGGGGATATGGCGGCGGCGGAAGTAGCGGTGGTGCTTGTTTTAATTGTGGACGGTACGGTCATTTAGCAA GGGATTGTTATGAAGGTGGCGATGATGGTGGGAGATACGGTGGCGGTGGAGGCAGGAGATATTCTGGTGGAGGTGGAGGTGGAGGTGGAGGATGCTATAA TTGTGGAGAGGAAGGGCATTTTGCGAGAGACTGTCCTAATGCTGGTAACAAGTGA
AA sequence Show only first row Show all	>Potri.002G086900.1 pacid=42776776 polypeptide=Potri.002G086900.1.p locus=Potri.002G086900 ID=Potri.002G086900.1.v4.1 annot-version=v4.1 MAETKRSTGTVKWFSAQKGFGFIAPDDGGEDLFVHQTSIQSDGFRTLSDGQPVEFSVGSGEDGRAKAADVVGASRSRRPPRGGRGGGGGRGYYSGRGRGG GYERGGHSRGRGYGGGGSSGGACFNCGRYGHLARDCYEGGDDGGRYGGGGGRRYSGGGGGGGGGCYNCGEEGHFARDCPNAGNK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17870		ATCSP3	ARABIDOPSIS COLD SHOCK DOMAIN ...		Potri.002G086900 [exp]	0	1
AT5G42370			Calcineurin-like metallo-phosp...		Potri.005G259700 [exp]	1.00	0.7797
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Potri.003G167900 [exp]	9.48	0.6948
AT5G58200			Calcineurin-like metallo-phosp...		Potri.006G188200 [exp]	12.36	0.6684
ATCG00720		ATCG00720.1, PE...	photosynthetic electron transf...		Potri.011G074700 [exp]	22.36	0.6997
ATCG00270		ATCG00270.1, PS...	photosystem II reaction center...		Potri.013G142201 [exp]	24.49	0.7129
					Potri.001G015450 [exp]	26.83	0.6263
ATCG00720		ATCG00720.1, PE...	photosynthetic electron transf...		Potri.007G062202 [exp]	36.55	0.6760
AT5G41761			unknown protein		Potri.002G167900 [exp]	36.59	0.6614
ATCG00720		ATCG00720.1, PE...	photosynthetic electron transf...		Potri.011G113784 [exp]	39.24	0.6644
ATCG01060		ATCG01060.1, PS...	iron-sulfur cluster binding;el...		Potri.019G014344 [exp]	40.81	0.6606

Compare expression of checked genes

Potri.002G086900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.