Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77700 383 / 7e-134 Pathogenesis-related thaumatin superfamily protein (.1) AT1G18250 242 / 5e-80 ATLP-1 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G75030 241 / 1e-79 ATLP-3 thaumatin-like protein 3 (.1) AT1G75050 240 / 2e-79 Pathogenesis-related thaumatin superfamily protein (.1) AT1G19320 236 / 1e-77 Pathogenesis-related thaumatin superfamily protein (.1) AT1G73620 230 / 3e-75 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75040 228 / 1e-74 PR-5, PR5 pathogenesis-related gene 5 (.1) AT4G38660 217 / 4e-69 Pathogenesis-related thaumatin superfamily protein (.1.2) AT2G17860 209 / 3e-67 Pathogenesis-related thaumatin superfamily protein (.1) AT5G24620 214 / 6e-67 Pathogenesis-related thaumatin superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G173900 [exp] 478 / 1e-172 AT1G77700 316 / 2e-107 Pathogenesis-related thaumatin superfamily protein (.1) Potri.003G020100 [exp] 340 / 7e-118 AT1G77700 274 / 1e-90 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G210400 [exp] 325 / 7e-112 AT1G77700 273 / 1e-90 Pathogenesis-related thaumatin superfamily protein (.1) Potri.014G040700 [exp] 230 / 2e-75 AT1G75030 342 / 5e-120 thaumatin-like protein 3 (.1) Potri.005G112600 [exp] 229 / 8e-74 AT4G38660 348 / 2e-119 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.015G039200 [exp] 225 / 3e-73 AT1G73620 352 / 1e-123 Pathogenesis-related thaumatin superfamily protein (.1) Potri.012G047800 [exp] 223 / 1e-72 AT1G73620 379 / 3e-134 Pathogenesis-related thaumatin superfamily protein (.1) Potri.004G173200 [exp] 223 / 3e-71 AT4G38660 357 / 5e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.009G132500 [exp] 222 / 8e-71 AT4G38660 338 / 3e-115 Pathogenesis-related thaumatin superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025629 [exp] 373 / 1e-129 AT1G77700 377 / 4e-130 Pathogenesis-related thaumatin superfamily protein (.1) Lus10009058 [exp] 235 / 3e-77 AT1G73620 376 / 2e-133 Pathogenesis-related thaumatin superfamily protein (.1) Lus10032726 [exp] 230 / 3e-75 AT1G75030 334 / 5e-117 thaumatin-like protein 3 (.1) Lus10017266 [exp] 223 / 2e-71 AT4G24180 322 / 7e-111 THAUMATIN-LIKE PROTEIN 1 (.1) Lus10028447 [exp] 221 / 6e-71 AT4G38660 359 / 4e-124 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10013561 [exp] 221 / 7e-71 AT4G38660 326 / 2e-112 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041899 [exp] 221 / 9e-71 AT4G38660 363 / 2e-125 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10003962 [exp] 211 / 6e-68 AT5G02140 387 / 4e-137 Pathogenesis-related thaumatin superfamily protein (.1) Lus10028448 [exp] 211 / 2e-67 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10023785 [exp] 209 / 1e-66 AT5G02140 379 / 2e-133 Pathogenesis-related thaumatin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [poplar] [flax] CDC PF00314 [poplar] [flax] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Potri.002G087100.1 pacid=42779393 polypeptide=Potri.002G087100.1.p locus=Potri.002G087100 ID=Potri.002G087100.1.v4.1 annot-version=v4.1 ATGGCACGTCTCCATGTGCATTTGCCGCTACTGCTGATTCTACTCCTGATTTCATCAGGGCCAAAAATGATGGAGTGTGCGAGGATTTTTACCATAGTTA ATTATTGCCAAGAAACGGTATGGCCGGGTGTCACCCCGGGTGACAACTTCAATGGTGGTGGATTTGAGTTAAAATCAGGACAATCAATTGTTTTCACTGC TCCGGTTGGCTGGAGTGGCCGGATATGGGGCAGAACAGGCTGCAAATTCGATAAAAATGGAAGTGGTTCATGCAAGACGGGGCCCTGCGGCACATCCCTG AAATGCAAGGCCTCCGGTGAGACCCCAGCCTCCCTTGCTGAATTTACCCTAACAACACTCGACTTTTACGATGTCAGCCTTGTCGACGGTTTTAATTTGC CAATAGCCGTTACACCAGTTAATGGTAAAGGAAATTGCAGCGTTGCTGGCTGTGATGCAGATCTGAGGGATACTTGTCCTTCCGAGCTCGCTGTTAAGTC CAACGGAAAGGTTATCGCTTGTCGGAGCGCCTGTGATGTGTTCAACACGGATGAATATTGTTGCAGGGGAGTTTATGGAAACCCTGTGGTTTGTCAACCT ACATATTATTCAAAGAAGTTCAAAGAAGCATGCCCTACTGCTTATAGCTATGCATATGATGATCCTACCAGTATTTTTACGTGCTCAGGGACTGATTATA TCGTTTCCTTTTGCTCGTCCAGGAAGCAACCGGTTTGCACCTACCATGACAACAAGCTTGTTTGCAGTGGATCAGAAGGCCTGAAATCATTGATTACTAG ATGGTGGGCTCTCGTGTTCGCAGTGCCACTGTTACTTACTTTCTGA
AA sequence Show only first row Show all	>Potri.002G087100.1 pacid=42779393 polypeptide=Potri.002G087100.1.p locus=Potri.002G087100 ID=Potri.002G087100.1.v4.1 annot-version=v4.1 MARLHVHLPLLLILLLISSGPKMMECARIFTIVNYCQETVWPGVTPGDNFNGGGFELKSGQSIVFTAPVGWSGRIWGRTGCKFDKNGSGSCKTGPCGTSL KCKASGETPASLAEFTLTTLDFYDVSLVDGFNLPIAVTPVNGKGNCSVAGCDADLRDTCPSELAVKSNGKVIACRSACDVFNTDEYCCRGVYGNPVVCQP TYYSKKFKEACPTAYSYAYDDPTSIFTCSGTDYIVSFCSSRKQPVCTYHDNKLVCSGSEGLKSLITRWWALVFAVPLLLTF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77700			Pathogenesis-related thaumatin...		Potri.002G087100 [exp]	0	1
AT1G14730			Cytochrome b561/ferric reducta...		Potri.010G102400 [exp]	1.73	0.9887
AT2G37925		COPT4	copper transporter 4 (.1)		Potri.006G093300 [exp]	3.16	0.9834
AT1G54400			HSP20-like chaperones superfam...		Potri.013G054700 [exp]	5.65	0.9792
AT3G17730	NAC	ANAC057	NAC domain containing protein ...		Potri.015G030200 [exp]	6.24	0.9796	NAC017
AT2G34530			unknown protein		Potri.004G064800 [exp]	7.07	0.9420
AT5G22580			Stress responsive A/B Barrel D...		Potri.004G187500 [exp]	9.89	0.9423
AT1G63310			unknown protein		Potri.011G149100 [exp]	12.04	0.9751
AT5G50290			unknown protein		Potri.015G078700 [exp]	13.07	0.9374
AT1G23530			unknown protein		Potri.010G041600 [exp]	13.19	0.9742
AT5G41470			Nuclear transport factor 2 (NT...		Potri.002G070800 [exp]	13.22	0.9732

Compare expression of checked genes

Potri.002G087100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.