Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G38131 704 / 0 O-fucosyltransferase family protein (.1) AT1G38065 637 / 0 O-fucosyltransferase family protein (.1) AT1G35510 525 / 0 O-fucosyltransferase family protein (.1) AT1G14970 525 / 0 O-fucosyltransferase family protein (.1) AT2G01480 520 / 7e-180 O-fucosyltransferase family protein (.1) AT3G26370 310 / 4e-98 O-fucosyltransferase family protein (.1) AT5G65470 304 / 2e-96 O-fucosyltransferase family protein (.1) AT4G24530 300 / 6e-95 O-fucosyltransferase family protein (.1) AT4G38390 295 / 3e-92 RHS17 root hair specific 17 (.1) AT1G76270 294 / 7e-92 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G173500 [exp] 1049 / 0 AT1G38131 697 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G130600 [exp] 553 / 0 AT2G01480 912 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G111500 [exp] 550 / 0 AT2G01480 906 / 0.0 O-fucosyltransferase family protein (.1) Potri.019G080900 [exp] 521 / 8e-180 AT1G35510 770 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G185200 [exp] 309 / 6e-98 AT3G26370 905 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G048500 [exp] 308 / 1e-97 AT3G26370 893 / 0.0 O-fucosyltransferase family protein (.1) Potri.007G011000 [exp] 307 / 1e-97 AT5G65470 784 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G105800 [exp] 304 / 3e-96 AT4G24530 807 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G249900 [exp] 304 / 8e-96 AT1G76270 776 / 0.0 O-fucosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028080 [exp] 651 / 0 AT1G38065 636 / 0.0 O-fucosyltransferase family protein (.1) Lus10025631 [exp] 649 / 0 AT1G38065 635 / 0.0 O-fucosyltransferase family protein (.1) Lus10003715 [exp] 545 / 0 AT2G01480 897 / 0.0 O-fucosyltransferase family protein (.1) Lus10013460 [exp] 536 / 0 AT2G01480 868 / 0.0 O-fucosyltransferase family protein (.1) Lus10034606 [exp] 521 / 3e-180 AT2G01480 848 / 0.0 O-fucosyltransferase family protein (.1) Lus10021790 [exp] 511 / 2e-176 AT2G01480 838 / 0.0 O-fucosyltransferase family protein (.1) Lus10009450 [exp] 500 / 2e-171 AT1G35510 816 / 0.0 O-fucosyltransferase family protein (.1) Lus10001545 [exp] 449 / 7e-152 AT1G35510 758 / 0.0 O-fucosyltransferase family protein (.1) Lus10023948 [exp] 309 / 2e-97 AT1G20550 697 / 0.0 O-fucosyltransferase family protein (.1) Lus10009276 [exp] 305 / 1e-96 AT4G24530 801 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF10250 [poplar] [flax] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.002G087300.1 pacid=42777353 polypeptide=Potri.002G087300.1.p locus=Potri.002G087300 ID=Potri.002G087300.1.v4.1 annot-version=v4.1 ATGGCTATAAACACTATAATGAAAAATAAAACTTATAATGTTGTCAGTAGTGAGGGGAGTGGTGGGGACGGAAATTCTTCTAGTCCACCATCGTCGCCAC GGCGTCAGACAAGCGGCTTCTCTCAATGTCGTCGGCGGCTCCGCTCGAAGGTTCAGTTGCAGTACTTTCGCAAAGACAGTTTGGCTGCCGGGATTTTTGT ACGGCGGAACATACAGTTCCTCCTGCTCTTGTTCTTTCTCTACTTTTCTGGTTTGATGATGTGTGTAGGCCGGTTCTCGGATTTCTTGCGTCACTCTCGT GAGCCTATTGCGATCTATAAAAGCCATGTCTTGTTGGAGAAGCTTTGGCATGATATCGAAACTGATAATTCTACTGCTCTCGAGTTATCTTCTGTATGGC AATTCAAAAGGAGAATGAAAGTGCAGAAACCTTGTCCCGTGTTAGCTGCTAGACGGCGTTTGGGCTCAGTCGAAGTGTCGTCTGGTCCCGCCGGGTACTT AATCGTGGAGGCAAATGGTGGTCTTAACCAACAGCGCTCTGCGATCTGTAATGCAGTTGCTGTAGCTGGAATCTTGAATGCAGTACTGGTCATCCCTAGT TTTGGTTACAACAGTGTCTGGAAGGATCCAAGTGAGTTCAGAGACATATATGATGAAGATCATTTTATAGCCACACTTGAGGGTTATGTGAAAGTGGTTG CAGAGTTGCCTGATGAGTTGATATCAAAATATGACCACAATATTACTAATATTCCACACCTCCGTGTTGAAGCATGGGCTCCTGCTAAACATTATTTAGG AGAAGTTTATCCTGTCCTGCAGGAGCAAGGGGTCATCCGCATTGCACCCTTTGCCAATAGATTGGCAATGAATGTCCCATCTCACATTCAATTGCTTAGG TGCATAACAAATTACAGAGCATTGAGGTTCTCTGCTCCTATAACAACCCTAGCACAGAAATTGGTAAACCGAATGATTGAAAGGAGCTCAATGACTGGTG GGAAATATGTGTCCGTTCACCTTCGATTTGAGGAGGACATGGTGGCCTTCTCAAGCTGTTTGTATGATGGAGGGGATGCTGAAAAGTCTGAAATGCATTC ATTTCGGGAAAAAGGGTGGAAGGGGAAGTTCAAAAGAAAAGATCTCGACTTCGTAGCTGGTCGTAATCGTATAGATGGAAAATGCCCTCTAACACCCTTG GAGGTTGGGATGATGCTGCGTGGCATGGGGTTCGGTAGCAACACTTCAATTTATTTAGCCTCAGGGAAAATTTACAAAGGAGAACAACATTTAGCTCCTT TATTGAAGATGTTTCCCCTTCTTTACACCAAGGAGTCACTTGCAACCTCTGACGAGCTTGCTCCTTTTCAGGGCTACTCTTCGAGGCTGGCAGCTTTGGA CTACACTGTATGCTTGTTCAGTGAGGTTTTTGTGACAACTCACGGTGGAAACTTCCCACATTTTCTGATGGGTCACCGTAGATTTCTTTTTAATGGGCAT GCAAAGACCATAAGGCCTGATAAACGCATGCTTGTTGGTCTACTAGAGAACATGACAATCAGCTGGAAGGACTTCAAGGATGACATGGATGCGATGCTCC TTGAAAGTGATCGCAAGGGAATGATGATTCCAAGAGTCAGAAAATTCAACAGAAAGAATTCGATCTACGCGTTCCCGTTGCCAGAATGTGACTGTCTCCA ATCACATGACTCCTCGCGCGGGATAAACCATACTCTTGATGTTCTTGATCCTCAACTTGAGGCCACAAGAGGAAGAGTTCCAGTCTCAGATTAG
AA sequence Show only first row Show all	>Potri.002G087300.1 pacid=42777353 polypeptide=Potri.002G087300.1.p locus=Potri.002G087300 ID=Potri.002G087300.1.v4.1 annot-version=v4.1 MAINTIMKNKTYNVVSSEGSGGDGNSSSPPSSPRRQTSGFSQCRRRLRSKVQLQYFRKDSLAAGIFVRRNIQFLLLLFFLYFSGLMMCVGRFSDFLRHSR EPIAIYKSHVLLEKLWHDIETDNSTALELSSVWQFKRRMKVQKPCPVLAARRRLGSVEVSSGPAGYLIVEANGGLNQQRSAICNAVAVAGILNAVLVIPS FGYNSVWKDPSEFRDIYDEDHFIATLEGYVKVVAELPDELISKYDHNITNIPHLRVEAWAPAKHYLGEVYPVLQEQGVIRIAPFANRLAMNVPSHIQLLR CITNYRALRFSAPITTLAQKLVNRMIERSSMTGGKYVSVHLRFEEDMVAFSSCLYDGGDAEKSEMHSFREKGWKGKFKRKDLDFVAGRNRIDGKCPLTPL EVGMMLRGMGFGSNTSIYLASGKIYKGEQHLAPLLKMFPLLYTKESLATSDELAPFQGYSSRLAALDYTVCLFSEVFVTTHGGNFPHFLMGHRRFLFNGH AKTIRPDKRMLVGLLENMTISWKDFKDDMDAMLLESDRKGMMIPRVRKFNRKNSIYAFPLPECDCLQSHDSSRGINHTLDVLDPQLEATRGRVPVSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G38131			O-fucosyltransferase family pr...		Potri.002G087300 [exp]	0	1
AT5G58520			Protein kinase superfamily pro...		Potri.009G075900 [exp]	6.32	0.8324
AT1G03620			ELMO/CED-12 family protein (.1...		Potri.013G136200 [exp]	6.32	0.8700
AT2G40820			unknown protein		Potri.006G035300 [exp]	7.34	0.8680
AT4G02010			Protein kinase superfamily pro...		Potri.002G194700 [exp]	9.69	0.8709
AT5G62890			Xanthine/uracil permease famil...		Potri.015G072600 [exp]	12.24	0.8180
AT5G62880		ARAC10, ATRAC10...	RHO-RELATED PROTEIN FROM PLANT...		Potri.012G077800 [exp]	12.48	0.8426
AT2G29890		ATVLN1, VLN1	villin 1, villin-like 1 (.1.2....		Potri.009G045000 [exp]	16.00	0.8365	VLN1.1
AT5G26670			Pectinacetylesterase family pr...		Potri.010G004400 [exp]	18.43	0.7899
AT2G46890			Protein of unknown function (D...		Potri.014G109200 [exp]	22.44	0.8568
AT1G20670			DNA-binding bromodomain-contai...		Potri.006G112000 [exp]	26.83	0.7893	BRD919

Compare expression of checked genes

Potri.002G087300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.