Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08210 890 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G13600 398 / 5e-129 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G39530 386 / 3e-123 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 386 / 1e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53360 383 / 2e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21300 375 / 2e-118 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G09040 368 / 2e-114 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G25970 360 / 2e-114 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G18485 366 / 4e-114 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G33680 355 / 3e-112 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G047800 [exp] 399 / 6e-127 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 391 / 2e-124 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G184800 [exp] 389 / 2e-123 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G124400 [exp] 378 / 7e-122 AT5G39350 785 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G006800 [exp] 380 / 3e-121 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.013G058900 [exp] 384 / 4e-120 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G018800 [exp] 378 / 9e-120 AT2G13600 463 / 3e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G146800 [exp] 374 / 1e-119 AT3G25970 805 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G164900 [exp] 371 / 2e-117 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028082 [exp] 889 / 0 AT4G08210 777 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10007806 [exp] 379 / 1e-119 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022890 [exp] 370 / 2e-117 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024936 [exp] 365 / 1e-115 AT3G61170 855 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032091 [exp] 362 / 2e-114 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013991 [exp] 365 / 1e-113 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014594 [exp] 358 / 5e-113 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016425 [exp] 356 / 5e-112 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10009269 [exp] 352 / 7e-112 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030249 [exp] 352 / 4e-111 AT3G25970 747 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.002G087400.5 pacid=42777332 polypeptide=Potri.002G087400.5.p locus=Potri.002G087400 ID=Potri.002G087400.5.v4.1 annot-version=v4.1 ATGAAAATGGACTTGAAGCATATAGTTGCAGCTATACGCCATTGTGGGCGAGTTCAAGCTCTCAAGCAAGGCAAATCATTTCATTCTCATTTGATCAAAA CTGGGTATTCTCATAACGTCTACATAGCCTGCAATTTGGTATCTATGTATGCTGACTTCACATTTTTAATCGACGCATATAAACTGTTTGATGAAATGCC TGTAAAAAACATCGTCACCTGGACCACTATGGTTTCTGCGTATACCAGCAATGGAAAGCCTCGTGAAGCAATAAAGCTATATACCCGGATGTTAGATTCT AAATCAGAAGTCCCTAATGGGTTTATGTACTCTGTGGTTTTGAAAGCGTGTGGTCTTGTGGGTGAGATTGAGCTGGGTAGACTGATTCATAAGAGATTTT CTAGAGAGAATTTAGATTACGATATTGTTTTGCTGAATGCTCTTTTGGATATGTATGTTAAATGCGGATGCTTGAGTGATGCAAGAAAAGTTTTCGATAG GATCTTTTTGAGGGCGAATTCCACTTCCTGGAATACAATGATTTCGGGGTATTTTAAGGAAGGTTTGGTGGAGGAGGCTGTTAATTTGTTCAATCAAATG CCGGACAGAAATGTTGTTTCTTGGAATACTATTATTGCTGGTCTTGCAGAAAATGGGAGTTCACGTGCATTACAGTTTGTTTGTAAGATGCACCGGGAAG GGATTAAGCTTGATAAATTTACTTTTCCATGTGCTCTTAAGACATGTAGCTATGCTGGTTTCTTAGTTGCAGGTAAACAGATTCACTGTTATGTTTTAAA GTCTGGTTTGGAGTCTAGTTGCTTCGCTGTGTCAGCGCTGGTTGATATGTATTCAAATTGCAACGGGTTAGATGATGCTATAAGGCTGTTTGATCAATAC TCAGGTGGTACTGGTTCAATCTGTGATAGCTTAGTACTCTGGAATTCTATGCTTTCAGGGTATGTTGTTCATGAGAAAAATAGAGCTGCTGTTAATATGA TTGCACAAATCCATCATTCTGGTGCTTCGGTTGACTCTTACACCTTGAGTAGTGCTTTGAAGGTCTGCATCAACTTGCTCAATGTGAGACTTGGGATTCA AGTTCATGCTTTGATTGTTACCAGTGGGCATGAGTTAGATTATGTTGTTGGAAGCATCCTTGTAGACCTCTATGCAAAACTGGGGAATATGAAAGATGCT TTTAAACTGTTTCATAGGCTTCCCAAGAAAGATATTGTAGCTTGGTCTGGTTTACTCATGGGGTGCGCTAAGATGGAATTGAACTCCTTAGCTTTGTCAC TGTTTAGAGATATGGTTACATTTGGTGTTGAAGTAGATCAGTATATTGTTTCTAATGTTCTGAAAGTCTGTTCTAGTTTGGCATCTATTGGAACCGGTAA ACAGGTACATGCTTTTTGTATCAAGAGAGGATATGAAACCGAACAGGTCACCATCACAGCCCTCATTGACATGTATTCAAAATGTGGTGAGGTAGAAGAT GGTTTGGTTTTGTTTGGCTGTGTTGCAGATAGGGATGTTGTATGCTGGACAGGGATCATTGTGGGGTGTGCGCAGAATGGAAGGGCAAATGAAGCTCTTG AAATTTTCCGACAGATGGTACAATCAGGGTTAAAGCCAAATGAAGTCACTTATCTAGGTGTCCTTACTGCATGTAGGCATGCTGGTTTGGTTGTAGAGGC ACAGACCATATTTGGGACCATGAAATGTGATCACAGACTTGAACCTCAACTAGAACATTATTATTGCATGGTTGATCTTCTATGTCAAGCTGGATATTTC AAAGAGGTAGAGAAGTTAATTGCTGAGATGCCATTTAAACCTGACAAAACCATATGGAGCTCGATGCTTGGGGCCTGTGGGACTCACAGGAATACTGGAT TGGTCAGTACCATTGCTGAGAACCTTCTTGCTAATTGTCCAAATGACCCTTCGATTTATGTTATGCTTTCAAATGCTTATGGAACTTTGGGAATGTGGGA TAGTCTAAGCCAAGTGAGGGAAGCTGCTAAAAAGTTGGGTGTCAAAGCAGCTGGAACGAGCTGGATTGAGATTTCAAGTTAA
AA sequence Show only first row Show all	>Potri.002G087400.5 pacid=42777332 polypeptide=Potri.002G087400.5.p locus=Potri.002G087400 ID=Potri.002G087400.5.v4.1 annot-version=v4.1 MKMDLKHIVAAIRHCGRVQALKQGKSFHSHLIKTGYSHNVYIACNLVSMYADFTFLIDAYKLFDEMPVKNIVTWTTMVSAYTSNGKPREAIKLYTRMLDS KSEVPNGFMYSVVLKACGLVGEIELGRLIHKRFSRENLDYDIVLLNALLDMYVKCGCLSDARKVFDRIFLRANSTSWNTMISGYFKEGLVEEAVNLFNQM PDRNVVSWNTIIAGLAENGSSRALQFVCKMHREGIKLDKFTFPCALKTCSYAGFLVAGKQIHCYVLKSGLESSCFAVSALVDMYSNCNGLDDAIRLFDQY SGGTGSICDSLVLWNSMLSGYVVHEKNRAAVNMIAQIHHSGASVDSYTLSSALKVCINLLNVRLGIQVHALIVTSGHELDYVVGSILVDLYAKLGNMKDA FKLFHRLPKKDIVAWSGLLMGCAKMELNSLALSLFRDMVTFGVEVDQYIVSNVLKVCSSLASIGTGKQVHAFCIKRGYETEQVTITALIDMYSKCGEVED GLVLFGCVADRDVVCWTGIIVGCAQNGRANEALEIFRQMVQSGLKPNEVTYLGVLTACRHAGLVVEAQTIFGTMKCDHRLEPQLEHYYCMVDLLCQAGYF KEVEKLIAEMPFKPDKTIWSSMLGACGTHRNTGLVSTIAENLLANCPNDPSIYVMLSNAYGTLGMWDSLSQVREAAKKLGVKAAGTSWIEISS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08210			Pentatricopeptide repeat (PPR-...		Potri.002G087400 [exp]	0	1
AT1G71420			Tetratricopeptide repeat (TPR)...		Potri.013G098800 [exp]	1.00	0.9308
AT1G25360			Pentatricopeptide repeat (PPR)...		Potri.002G027800 [exp]	1.73	0.9230
AT1G13410			Tetratricopeptide repeat (TPR)...		Potri.008G121400 [exp]	2.82	0.9261
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.009G035100 [exp]	3.46	0.9142
AT2G39620			Pentatricopeptide repeat (PPR)...		Potri.008G052200 [exp]	5.00	0.9132
AT5G08490		SLG1	SLOW GROWTH 1, Tetratricopepti...		Potri.004G134300 [exp]	5.19	0.8863
					Potri.018G133300 [exp]	6.00	0.8803
AT3G56550			Pentatricopeptide repeat (PPR)...		Potri.016G029500 [exp]	7.48	0.8899
AT1G11900			Tetratricopeptide repeat (TPR)...		Potri.001G273100 [exp]	8.77	0.8829
AT1G56690			Pentatricopeptide repeat (PPR)...		Potri.013G005400 [exp]	9.16	0.8901

Compare expression of checked genes

Potri.002G087400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.