Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77720 801 / 0 PPK1 putative protein kinase 1 (.1) AT4G08470 113 / 7e-26 MEKK3, MAPKKK10 MAPK/ERK kinase kinase 3 (.1) AT4G08500 105 / 3e-23 ARAKIN, ATMEKK1, MAPKKK8, MEKK1 MAPK/ERK kinase kinase 1 (.1) AT4G29810 97 / 2e-21 MK1, ATMKK2 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) AT3G48750 96 / 2e-21 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT4G08480 97 / 2e-20 MEKK2, MAPKKK9 MAPK/ERK KINASE KINASE 2, mitogen-activated protein kinase kinase kinase 9 (.1) AT3G21220 94 / 2e-20 ATMAP2K_ALPHA, ATMKK5, ATMEK5 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) AT1G51660 92 / 1e-19 ATMKK4, ATMEK4 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) AT1G63700 94 / 2e-19 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT1G50240 94 / 2e-19 FU FUSED, Protein kinase family protein with ARM repeat domain (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G173300 [exp] 1349 / 0 AT1G77720 832 / 0.0 putative protein kinase 1 (.1) Potri.005G172200 [exp] 106 / 1e-23 AT4G08500 421 / 6e-141 MAPK/ERK kinase kinase 1 (.1) Potri.002G088900 [exp] 105 / 2e-23 AT4G08500 411 / 4e-137 MAPK/ERK kinase kinase 1 (.1) Potri.018G050800 [exp] 97 / 3e-21 AT4G29810 540 / 0.0 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Potri.004G133500 [exp] 96 / 3e-21 AT3G48750 540 / 0.0 cell division control 2 (.1) Potri.012G143900 [exp] 97 / 2e-20 AT1G63700 766 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.015G030700 [exp] 94 / 2e-20 AT1G73500 392 / 9e-138 MAP kinase kinase 9 (.1) Potri.015G146700 [exp] 97 / 3e-20 AT1G63700 826 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.010G249300 [exp] 94 / 3e-20 AT3G21220 474 / 1e-168 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028085 [exp] 911 / 0 AT1G77720 745 / 0.0 putative protein kinase 1 (.1) Lus10025634 [exp] 824 / 0 AT1G77720 650 / 0.0 putative protein kinase 1 (.1) Lus10042698 [exp] 104 / 6e-23 AT4G08500 518 / 5e-179 MAPK/ERK kinase kinase 1 (.1) Lus10003745 [exp] 97 / 6e-22 AT4G08500 400 / 4e-137 MAPK/ERK kinase kinase 1 (.1) Lus10029657 [exp] 99 / 2e-21 AT4G08480 520 / 9e-180 MAPK/ERK KINASE KINASE 2, mitogen-activated protein kinase kinase kinase 9 (.1) Lus10038755 [exp] 96 / 2e-21 AT3G48750 468 / 7e-169 cell division control 2 (.1) Lus10028038 [exp] 98 / 7e-21 AT4G08500 494 / 1e-169 MAPK/ERK kinase kinase 1 (.1) Lus10036106 [exp] 97 / 9e-21 AT5G10270 689 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10026790 [exp] 97 / 1e-20 AT5G10270 675 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10042750 [exp] 93 / 2e-20 AT4G08500 380 / 8e-129 MAPK/ERK kinase kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.002G087600.3 pacid=42779653 polypeptide=Potri.002G087600.3.p locus=Potri.002G087600 ID=Potri.002G087600.3.v4.1 annot-version=v4.1 ATGGACAGGGAGGCTAACCTTCCTCTCCCATCTCTACCTCCGCCAAAAAATCTCGTTCGTCCGGTCACCAACGCCGCCGACACGACTTCATCTTCGTCCT CGTTCTCTTCCTCCCCCCCGGACTTTCTCCGGCATGTCCAAGCCGCCTTCAAGCGCCACCGCCCCCTCGGTACCACCACCCCTATCTGTATAATGCAAAC GAATAATAGTATAAAGCCTAGGCGTACGTTGATTCCACAGCGTGAAGCATCGAGAACCGTAGCTTCAAATGTGGATCCTACTACAGGGACGAAGAAGTCT CAAGATGTTGTTCCTCTAAGTAAAGATTCAATTTTGCAAACAAAGAATCCAGTTGCTGTTATTAGGGAAACTCATGAAGATGCATCTCCGTTTCCAGGAA CCATTACAAAGACGTTTGATGAGAGTTTCAATCCGTTTGATGGACAGAGAGAGCAACCAGAATCTGTTATTGCTACTAAAGAGGATAATCAGGTGCCCCT GACATGTGTAGAATCTCAACTTGTTGAGGGTAAGAGAAAAGTCCAGTTTTTGACAGTGAACAAGGCCACTTCCCAGGGGGCCGATGATGGAATGGCCACT GGATTGGAGAACTTGTCTTCTCATATGGGTTCACTTGCATTGACAGAAATGGAATGGGATGTGAGCAATCAAGTAGAGGTGTCAAATGTGATTAATGATG AAACGAAGCAGCAGAACTTTCATAACATGGAATCAGATGTCACTTCGAGATCTGATGGAGCTGTAACATCACTGGCAAAGAGAGCAATGGTTGTTCAGGA TCAGTTGCATCAATTGAGGAACTTCTTAAACCAACCAGCTACTCAATCATCTGTTGTTGGTCCATCTTGTGCTACCACAACATCTGTTCATTCTACTTCG GCACCCATGCTTAACTCAACGACTTATTGCTCTCGTCTACATACAGAGAATGGTTCTCAAGCTGCTGTCGAACCTTTGAGGGATTCTAATGCAAATTCTC AGCATGTAACTCCAAGGAATTTGGAGCAGCTGTCACATCCTTTATTGAAGGACACAAGTGCTATGCTAATTGACCTGAGAGCCACTGCAACCCAGCCTTC TACCTCTGCTATTCATTCCCAATTTAAGGAGCTTGACCTGCCTAAGGAGCAAAAGGGAAGCATGCCTGAGGCACATGACATTGCAAACAATCCTTCTCTT GTTGATAAGCCCGCTAAGGAGAGAGGACCCGCAGATGAAGGTACTGATGTCCAATCTCAGCGTCCAATGTCCAGAAACCCATCTTCAAATGTGAAGTTGG AGCCATCTAAACCAGAAAACAAAGAAAAGGTTGCAAGCAGTAAAGGCACATCAGTACCTCGGAAAAGGAGTTATGATCCAGATTTGTTCTTTAAAGTTAA TGGGAAGCTCTATCAAAGGCTTGGTAAGATAGGAAGTGGAGGAAGTAGTGAGGTTCACAAAGTCATTTCCTCAGACTGTACAATCTATGCACTCAAGAAA ATCAAGCTCAAGGGTCGTGATTATGGAACTGCATATGGTTTTTGCCAGGAAATTCTATATCTAAACAAATTAAAGGGGAAGAACAACATTATACAGTTAA TAGATTATGAGGTGACAGATAAAGCTTTGCTCCATGAAGTCATGAGTAGCTCCATAAGTAATAAAGATGGAAGAGTTAAGGATGATGGGTGCATATACAT GGTCCTTGAATACGGGGAAATTGATTTGGCTCACATGCTGGCCCAGAAATGGAAGGAGATGGATAGCTCCAACCAGACGATAGATGAGAATTGGCTTAGA TTTTACTGGCAGCAAATACTTCAAGCTGTCAATACCATTCATGAGGAACGTATTGTACACTCTGACCTGAAGCCAGCAAATTTTCTTCTTGTCAAAGGTT CTCTGAAGTTGATTGATTTTGGTATCGCCAAAGCCATAATGAGTGATACCACTAATATTCAAAGGGATTCACAGGTAGGTACCCTGAGCTACATGTCTCC AGAGGCATTCATGTGCAATGAGAGTGATGCGAATGGAAACACCATAAAGTGTGGTCGACCATCAGATATTTGGTCCCTTGGCTGTATCCTTTACCAAATG GTGTATGGAAGAACCCCCTTTTCTGAGTTCAAGACTTTTTGGGCCAAGTTCAAAGTTATAACAGATCCAAACCATGAGATAACTTATGAGCCAGTTTCCA ACCCATGGCTTCTTGATCTTATGAAAAAATGCTTGGCTTGGGACCGGAACGAGAGGTGGAGAATCCCTCAATTACTTCAACACCCTTTTCTTGTTCCACC AGTACCAACTCAACCATCAGTATCTCAGAAACAAGGTTGTAAACTGCTTCAACTTGTCTCAGAAACTTGTAGCGGTGACCAAGAAGCTTCTGTGCTATGC CGTGAGCTCCAACAATTGCTTAACCCAGGTACTCTCACACCTGAGTCATCAACATCGCGAGACCAACAATGTAAGTTGCTCTCGCAGATGTCTAAGCTTT GTTTTCAGCTCCGGGAGTGTTTAGCAAAGTTAGAGAGAGGATAG
AA sequence Show only first row Show all	>Potri.002G087600.3 pacid=42779653 polypeptide=Potri.002G087600.3.p locus=Potri.002G087600 ID=Potri.002G087600.3.v4.1 annot-version=v4.1 MDREANLPLPSLPPPKNLVRPVTNAADTTSSSSSFSSSPPDFLRHVQAAFKRHRPLGTTTPICIMQTNNSIKPRRTLIPQREASRTVASNVDPTTGTKKS QDVVPLSKDSILQTKNPVAVIRETHEDASPFPGTITKTFDESFNPFDGQREQPESVIATKEDNQVPLTCVESQLVEGKRKVQFLTVNKATSQGADDGMAT GLENLSSHMGSLALTEMEWDVSNQVEVSNVINDETKQQNFHNMESDVTSRSDGAVTSLAKRAMVVQDQLHQLRNFLNQPATQSSVVGPSCATTTSVHSTS APMLNSTTYCSRLHTENGSQAAVEPLRDSNANSQHVTPRNLEQLSHPLLKDTSAMLIDLRATATQPSTSAIHSQFKELDLPKEQKGSMPEAHDIANNPSL VDKPAKERGPADEGTDVQSQRPMSRNPSSNVKLEPSKPENKEKVASSKGTSVPRKRSYDPDLFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCTIYALKK IKLKGRDYGTAYGFCQEILYLNKLKGKNNIIQLIDYEVTDKALLHEVMSSSISNKDGRVKDDGCIYMVLEYGEIDLAHMLAQKWKEMDSSNQTIDENWLR FYWQQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRDSQVGTLSYMSPEAFMCNESDANGNTIKCGRPSDIWSLGCILYQM VYGRTPFSEFKTFWAKFKVITDPNHEITYEPVSNPWLLDLMKKCLAWDRNERWRIPQLLQHPFLVPPVPTQPSVSQKQGCKLLQLVSETCSGDQEASVLC RELQQLLNPGTLTPESSTSRDQQCKLLSQMSKLCFQLRECLAKLERG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77720		PPK1	putative protein kinase 1 (.1)		Potri.002G087600 [exp]	0	1
AT5G62410		TTN3, ATSMC4, A...	TITAN 3, structural maintenanc...		Potri.003G108400 [exp]	4.58	0.8816	CPE902,Pt-SMC2.2
AT5G65360			Histone superfamily protein (....		Potri.003G207700 [exp]	4.89	0.8503
AT1G08260		ESD7, EMB142, E...	TILTED 1, EARLY IN SHORT DAYS ...		Potri.004G185700 [exp]	5.47	0.8327
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Potri.007G138600 [exp]	6.48	0.8788
AT4G32730	MYB	ATMYB3R-1, PC-M...	C-MYB-LIKE TRANSCRIPTION FACTO...		Potri.018G038000 [exp]	6.70	0.8191	MYB222
AT4G29910		EMB2798, ORC5, ...	EMBRYO DEFECTIVE 2798, origin ...		Potri.001G135975 [exp]	11.48	0.8236
AT1G79950			RAD3-like DNA-binding helicase...		Potri.001G180200 [exp]	11.95	0.8202
AT5G16690		ORC3, ATORC3	origin recognition complex sub...		Potri.013G077200 [exp]	13.22	0.8028
AT5G65360			Histone superfamily protein (....		Potri.003G210100 [exp]	16.30	0.8198	HTR902
					Potri.001G151601 [exp]	18.13	0.7746

Compare expression of checked genes

Potri.002G087600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.