Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25710 483 / 2e-171 HCS1 holocarboxylase synthase 1 (.1.2) AT1G37150 470 / 4e-167 HCS2 holocarboxylase synthetase 2 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G173000 [exp] 589 / 0 AT2G25710 482 / 3e-172 holocarboxylase synthase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025604 [exp] 487 / 5e-173 AT2G25710 492 / 2e-175 holocarboxylase synthase 1 (.1.2) Lus10027084 [exp] 476 / 4e-169 AT2G25710 486 / 7e-174 holocarboxylase synthase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0206 [poplar] [flax] TRB PF02237 [poplar] [flax] BPL_C Biotin protein ligase C terminal domain CL0040 [poplar] [flax] tRNA_synt_II PF03099 [poplar] [flax] BPL_LplA_LipB Biotin/lipoate A/B protein ligase family
Representative CDS sequence Show only first row Show all	>Potri.002G087700.1 pacid=42778058 polypeptide=Potri.002G087700.1.p locus=Potri.002G087700 ID=Potri.002G087700.1.v4.1 annot-version=v4.1 ATGCCAGAAAAACTTCTCTCGCGCTTCTCTCGCGCTTCATTCACGCTTCCTCACCTGCGTTTTCTCTCTCCACAATCTTCTCTCTCGCTCCGCTCTCTAC ATAACTTCATTGCTCCTACAAGCCAGAAAAGCCCATTCACTCTATCTCGATCAGTTGCAGCCGCTACAGCAATGGATAGCAGCAGCAGCACGCCTTGTAA GCTGGTATTATGCGGAAAATCATCTGCAGAGAATGAAATTGCTAAATCATTAATGAATAATAACACTCTTAAACTGCCTGATAATGTGCAAGTCTCTACT CTCTTGCACTCGGAGATTATTAATAAGCAGCAGCGGCAAGACGAAGAGTCTTTCTGTATTGAACGGTTTATGAATTCTCTTTCAACTAATCAATTCGGTA GATTACTCATCTGGTCGCCGATATTGCCTTCAACTCATGATGTTGTTTCCAATAATTTTGGTGAGCTTCCAATTGGTACTGTTTGCGTTGCTGATGTTCA ATATAAAGGGCGAGGTCGATCAAAGAATGTATGGGAATCTCCAGCAGGTTGCCTGATGTTTTCATTTACCATTCAAATGGAGGATGGACGAGTTGTGCCT TTGTTGCAATATGTAGTGTCTCTTGCTGTTACAGAGGCAATAAAGGATGTTTGCGACAAAAATGGCTTACCGCGTATTGATGTTAGAATCAAATGGCCAA ATGATCTTTATTTGAATGGTCTTAAAGTTGGAGGCATTCTCTCCACCTCAACATATAAATCAAAGAAGTTCAATGTCAGTACCGGTATAGGCTTGAATGT CGATAATGAGAAACCAACAACATGCTTGAATGCAGTCTTAAGAGAATTGTCTGCTGCTGCATGCACATTAAGAAGAGAAGATATTGTTGCAGCCTTTCTA AATAAATTTGAAAATTTTTATGATCTTTTCATAAATGGAGGATTTCAAACTCTTGAGGAGCTTTACTATAAAACATGGCTACACAGTGGGCAGAGAGTTA TCATCCAGGAGAAGAACGAGAACCAAGTAGTGGAGAACGTGGTCACCATTCAGGGTTTGACATCCTCGGGTTATTTGCTAGCTATCGGTGAAGACAATCA AATGTGTGAACTTCATCCTGATGGCAATAGTTTTGACTTCTTCAAAGGACTAGTCAGAAGAAAACTTGAATAA
AA sequence Show only first row Show all	>Potri.002G087700.1 pacid=42778058 polypeptide=Potri.002G087700.1.p locus=Potri.002G087700 ID=Potri.002G087700.1.v4.1 annot-version=v4.1 MPEKLLSRFSRASFTLPHLRFLSPQSSLSLRSLHNFIAPTSQKSPFTLSRSVAAATAMDSSSSTPCKLVLCGKSSAENEIAKSLMNNNTLKLPDNVQVST LLHSEIINKQQRQDEESFCIERFMNSLSTNQFGRLLIWSPILPSTHDVVSNNFGELPIGTVCVADVQYKGRGRSKNVWESPAGCLMFSFTIQMEDGRVVP LLQYVVSLAVTEAIKDVCDKNGLPRIDVRIKWPNDLYLNGLKVGGILSTSTYKSKKFNVSTGIGLNVDNEKPTTCLNAVLRELSAAACTLRREDIVAAFL NKFENFYDLFINGGFQTLEELYYKTWLHSGQRVIIQEKNENQVVENVVTIQGLTSSGYLLAIGEDNQMCELHPDGNSFDFFKGLVRRKLE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25710		HCS1	holocarboxylase synthase 1 (.1...		Potri.002G087700 [exp]	0	1
AT2G42240			RNA-binding (RRM/RBD/RNP motif...		Potri.007G046600 [exp]	4.24	0.6165
AT1G60900			U2 snRNP auxilliary factor, la...		Potri.011G050400 [exp]	33.10	0.4962
AT5G45760			Transducin/WD40 repeat-like su...		Potri.011G069700 [exp]	35.91	0.5069
AT3G26618		ERF1-3	eukaryotic release factor 1-3 ...		Potri.003G159000 [exp]	46.47	0.4396	ERF1.5
AT5G42560			Abscisic acid-responsive (TB2/...		Potri.002G023500 [exp]	55.58	0.4538
AT2G24170			Endomembrane protein 70 protei...		Potri.006G184200 [exp]	57.78	0.4282
AT3G53490			unknown protein		Potri.016G081900 [exp]	78.66	0.4569
AT5G45580	GARP		Homeodomain-like superfamily p...		Potri.003G100100 [exp]	85.04	0.4498

Compare expression of checked genes

Potri.002G087700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.