Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08180 1144 / 0 ORP1C OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) AT2G31020 1060 / 0 ORP1A OSBP(oxysterol binding protein)-related protein 1A (.1) AT1G13170 885 / 0 ORP1D OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) AT4G12460 797 / 0 ORP2B OSBP(oxysterol binding protein)-related protein 2B (.1), OSBP(oxysterol binding protein)-related protein 2B (.2) AT4G22540 788 / 0 ORP2A OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) AT2G31030 700 / 0 ORP1B OSBP(oxysterol binding protein)-related protein 1B (.1) AT1G77730 258 / 3e-80 Pleckstrin homology (PH) domain superfamily protein (.1) AT3G09300 180 / 4e-49 ORP3B OSBP(oxysterol binding protein)-related protein 3B (.1) AT5G02100 174 / 5e-47 UNE18, ORP3A UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1) AT5G59420 170 / 2e-45 ORP3C OSBP(oxysterol binding protein)-related protein 3C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G172900 [exp] 1379 / 0 AT4G08180 1158 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.019G015111 [exp] 926 / 0 AT4G08180 889 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.010G051400 [exp] 889 / 0 AT1G13170 1211 / 0.0 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Potri.003G111600 [exp] 836 / 0 AT4G22540 1100 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Potri.001G121700 [exp] 834 / 0 AT4G22540 1109 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Potri.008G182766 [exp] 316 / 4e-101 AT1G13170 471 / 2e-161 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Potri.006G086400 [exp] 173 / 1e-46 AT3G09300 764 / 0.0 OSBP(oxysterol binding protein)-related protein 3B (.1) Potri.018G143600 [exp] 67 / 2e-11 AT4G25850 412 / 2e-143 OSBP(oxysterol binding protein)-related protein 4B (.1), OSBP(oxysterol binding protein)-related protein 4B (.2) Potri.006G076400 [exp] 61 / 2e-09 AT5G57240 392 / 9e-136 OSBP(oxysterol binding protein)-related protein 4C (.1), OSBP(oxysterol binding protein)-related protein 4C (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028087 [exp] 1209 / 0 AT4G08180 1147 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10025635 [exp] 1203 / 0 AT4G08180 1142 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10036949 [exp] 903 / 0 AT1G13170 1241 / 0.0 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Lus10025695 [exp] 872 / 0 AT4G08180 887 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10006237 [exp] 870 / 0 AT1G13170 1219 / 0.0 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Lus10024613 [exp] 798 / 0 AT4G22540 1065 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Lus10032251 [exp] 716 / 0 AT4G22540 979 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Lus10035967 [exp] 575 / 0 AT4G08180 803 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10024386 [exp] 174 / 8e-47 AT5G02100 771 / 0.0 UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1) Lus10010843 [exp] 171 / 1e-45 AT5G02100 771 / 0.0 UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01237 [poplar] [flax] Oxysterol_BP Oxysterol-binding protein CL0266 [poplar] [flax] PH PF15413 [poplar] [flax] PH_11 Pleckstrin homology domain
Representative CDS sequence Show only first row Show all	>Potri.002G088000.1 pacid=42778913 polypeptide=Potri.002G088000.1.p locus=Potri.002G088000 ID=Potri.002G088000.1.v4.1 annot-version=v4.1 ATGCATCCGCTTTGCTGCATCTCCACCGTGTCCGATCACTCGCCGGCGAATCTATCGATGGCAGTCACCGCCAGATCCGACCCCGGATCAACCACCGTTC ATCCACAAATTCAAATTCAAATCCAAAACCACAACCAACACAACACTAATCATTTCTCAAACCACCACCACCACAACCACAGCACCGCCAGCAACTGCAG CAGCAGCAACGGAACAGATGGTAACAAAAGTAACAGGACGAGTCACCAGAGGGAGCAACCACTTGTACAGGTGGATGTGAAGATAAATGATATAGTAGGG AATGGGATATCGGGGGTTTTATATAAGTGGGTGAACTACGGGAAAGGTTGGAGGCCGAGATGGTTCGTTTTGCAAGATGGAGTGTTGTCGTATTATAAAA TTCATGGACCTGATAAGATTTTCGTTAATCAAGAGACCGAGAAAGGATCCAAAGTTATCGGTGAAGAATCTATGAGACGTATTTCTAGGCCTAAGAATGG GAATTCGCAGAATAGGCGTAAGCCTGTTGGTGAAATTCACCTCAAGGTATCATCAATCCGCGAGAGCAGATCAGATGACAAGAGGTTCTCAATATTTACT GGCACAAAGAGGCTGCACTTGAGAGCAGAGACACGTGAGGATCGCTTGGCATGGATGGAAGCATTGCAGGCTGTGAAGGATATGTTCCCTCGTATGTCTA ACAGTGAACTAATGGCTCCTTTGGACAATGTGGCTGTCTCAACAGAGAAGCTGAGGCAGCGGCTTCAAGAGGAGGGAGTCAGGGAGGAGGTGATACAGGA TGGCGAGCAGATCATGAGGACTGAGTTTGCAGCGCTGCAGAACCAGATAGTGCTTCTCAAGCAGAAGCAATGGCTTCTCATCGACACGCTTCGCCAGCTA GAGACAGAAAAGGTTGACTTGGAGAATACAGTAGTTGATGAGAGCCAAAGACAGTTGAACGATCAACGCACATCTTCTTCCACTCTGCCACAAGACAAAT TTAGTGCAAGTGTCAGTGAATCTGATGATGATAATGAAAGAGTTGATGCTGCAGAGGAAGAGACGGATGATGAAGAGAATACATTCTTTGACACCCGTGA TTTTCTATCATCGGGTTCTTTTAAAAGTAACGAGTCTGGTTTCCGAACATCATCATTCTCTTCGGATGATGAAGGGTTTTTTTCTCTAGAATCAGAAGAT TGCATTGATCCTTCAATTAGATCTGTTGGCTCAAACTATCCTTACATTAAGCGTCGTAAGAAGTTACCTGACCCAATTGAAAAAGAAAAAGGTGTCAGTC TATGGTCGATGATTAAGGATAACATTGGGAAGGACCTTACCAAAGTTTGCCTTCCTGTTTACTTCAATGAGCCTCTCTCTTCGTTACAAAAATGCTTTGA AGATTTGGAATACTCGTATCTTCTTGATCGGGCATATGAATGGGGAAAACAGGGTAACAGTCTTATGAGGATTCTTAATGTGGCTGCTTTTGCTGTTTCT GGATATGCTTCAACTGAAGGAAGAGTTTGCAAACCTTTTAATCCATTATTAGGGGAAACATATGAGGCCGACTATCCAGATAAGGGCCTCCGGTTTTTCT CAGAAAAGGTCAGTCATCACCCCATGATTGTCGCATGCCATTGTGTGGGTACAGGATGGAAATTTTGGGGTGATAGCAATCTAAAAAGCAAATTTTGGGG TCGCTCGATTCAGCTTGATCCCGTTGGAGTTTTGACCTTGGAATTTGATGACGGAGAAGTCTTCCAATGGAGTAAGGTTACAACATCAATATACAATCTT ATACTAGGAAAATTGTACTGTGATCACTATGGTACAATGCGATTAGAAGGAAATTGTGGGTATTCATGTAAGCTGAAATTCAAGGAGCAGTCTATTATAG ACCGAAATCCTCACCAGGTACAGGGAGTAGTTCAAGATAGGCATGGTAAAACAGTGGCAACTCTTTTTGGAAAATGGGATGAGAGCGTGTATTACATGAA TGGTGACTTTTCCGGGAAGGGAAAAGGATTTGAGTCTACGAAAGAAGCTCATATGCTCTGGAAGCGAAGTAAACCTCCCAGATTTCCCACCAGATACAAT TTGACACGCTTTGCCATTACATTGAATGAGCTCACTCCTGGACTTGAGGAAAAGTTGCCTCCCACAGATTCAAGGCTTAGACCCGATCAAAGGTACTTGG AAAATGGTGAATTTGATATGGCAAATTCAGAGAAATTACGGCTAGAGCAACGTCAGCGCCAGGCCCGAAAGATGCAAGAGCGGGGTTGGCAGCCGCGGTG GTTTGCAAAGGATAAAGGAAGTGATGCATACCATTATGTTGGCGGGTATTGGGAGGCAAGAGACAAGGGAGATTGGGATTCGTGCCCTGATATATTTGGC CAGATTCCTATCGATCAGCTCTTTGATTAA
AA sequence Show only first row Show all	>Potri.002G088000.1 pacid=42778913 polypeptide=Potri.002G088000.1.p locus=Potri.002G088000 ID=Potri.002G088000.1.v4.1 annot-version=v4.1 MHPLCCISTVSDHSPANLSMAVTARSDPGSTTVHPQIQIQIQNHNQHNTNHFSNHHHHNHSTASNCSSSNGTDGNKSNRTSHQREQPLVQVDVKINDIVG NGISGVLYKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIFVNQETEKGSKVIGEESMRRISRPKNGNSQNRRKPVGEIHLKVSSIRESRSDDKRFSIFT GTKRLHLRAETREDRLAWMEALQAVKDMFPRMSNSELMAPLDNVAVSTEKLRQRLQEEGVREEVIQDGEQIMRTEFAALQNQIVLLKQKQWLLIDTLRQL ETEKVDLENTVVDESQRQLNDQRTSSSTLPQDKFSASVSESDDDNERVDAAEEETDDEENTFFDTRDFLSSGSFKSNESGFRTSSFSSDDEGFFSLESED CIDPSIRSVGSNYPYIKRRKKLPDPIEKEKGVSLWSMIKDNIGKDLTKVCLPVYFNEPLSSLQKCFEDLEYSYLLDRAYEWGKQGNSLMRILNVAAFAVS GYASTEGRVCKPFNPLLGETYEADYPDKGLRFFSEKVSHHPMIVACHCVGTGWKFWGDSNLKSKFWGRSIQLDPVGVLTLEFDDGEVFQWSKVTTSIYNL ILGKLYCDHYGTMRLEGNCGYSCKLKFKEQSIIDRNPHQVQGVVQDRHGKTVATLFGKWDESVYYMNGDFSGKGKGFESTKEAHMLWKRSKPPRFPTRYN LTRFAITLNELTPGLEEKLPPTDSRLRPDQRYLENGEFDMANSEKLRLEQRQRQARKMQERGWQPRWFAKDKGSDAYHYVGGYWEARDKGDWDSCPDIFG QIPIDQLFD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Potri.002G088000 [exp]	0	1
AT5G54830			DOMON domain-containing protei...		Potri.006G262300 [exp]	6.32	0.7236
AT2G01480			O-fucosyltransferase family pr...		Potri.010G111500 [exp]	14.17	0.7422
AT2G01100			unknown protein		Potri.008G126800 [exp]	15.09	0.7009
					Potri.011G143050 [exp]	21.79	0.7199
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Potri.010G006300 [exp]	22.24	0.6905
					Potri.005G051850 [exp]	24.61	0.7260
AT3G14400		UBP25	ubiquitin-specific protease 25...		Potri.001G394600 [exp]	34.24	0.6737
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Potri.007G054900 [exp]	49.95	0.6386
AT1G78610		MSL6	mechanosensitive channel of sm...		Potri.011G105500 [exp]	100.69	0.6384
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Potri.006G064200 [exp]	106.75	0.6337	Pt-CRCK3.1

Compare expression of checked genes

Potri.002G088000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.