Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G37140 159 / 2e-46 MCT1 MEI2 C-terminal RRM only like 1 (.1.2) AT3G26120 130 / 4e-33 TEL1 terminal EAR1-like 1 (.1) AT1G67770 116 / 3e-28 TEL2 terminal EAR1-like 2 (.1) AT5G07930 97 / 7e-23 MCT2 MEI2 C-terminal RRM only like 2 (.1.2.3) AT5G61960 89 / 8e-19 AML1 MEI2-like protein 1 (.1.2) AT5G07290 86 / 1e-17 AML4 MEI2-like 4 (.1) AT4G18120 84 / 3e-17 AML3 MEI2-like 3 (.1.2) AT1G29400 80 / 7e-16 AML5 MEI2-like protein 5 (.1.2) AT2G42890 67 / 8e-12 AML2, MEI2 MEI2-like 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G183000 [exp] 142 / 6e-37 AT3G26120 455 / 1e-152 terminal EAR1-like 1 (.1) Potri.013G084400 [exp] 137 / 1e-36 AT3G26120 150 / 2e-40 terminal EAR1-like 1 (.1) Potri.010G051100 [exp] 139 / 4e-36 AT3G26120 259 / 3e-77 terminal EAR1-like 1 (.1) Potri.012G107100 [exp] 87 / 3e-18 AT5G07290 750 / 0.0 MEI2-like 4 (.1) Potri.015G106000 [exp] 87 / 3e-18 AT5G61960 767 / 0.0 MEI2-like protein 1 (.1.2) Potri.003G162700 [exp] 84 / 4e-17 AT5G07290 645 / 0.0 MEI2-like 4 (.1) Potri.005G202000 [exp] 83 / 7e-17 AT1G29400 778 / 0.0 MEI2-like protein 5 (.1.2) Potri.001G067300 [exp] 82 / 1e-16 AT5G61960 627 / 0.0 MEI2-like protein 1 (.1.2) Potri.002G059800 [exp] 82 / 2e-16 AT1G29400 781 / 0.0 MEI2-like protein 5 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025641 [exp] 148 / 1e-40 AT1G37140 142 / 6e-40 MEI2 C-terminal RRM only like 1 (.1.2) Lus10018195 [exp] 146 / 2e-40 AT1G37140 128 / 2e-35 MEI2 C-terminal RRM only like 1 (.1.2) Lus10018194 [exp] 147 / 3e-40 AT1G37140 143 / 1e-40 MEI2 C-terminal RRM only like 1 (.1.2) Lus10025640 [exp] 142 / 1e-39 AT1G37140 131 / 3e-37 MEI2 C-terminal RRM only like 1 (.1.2) Lus10036953 [exp] 132 / 2e-33 AT3G26120 429 / 7e-143 terminal EAR1-like 1 (.1) Lus10006234 [exp] 130 / 6e-33 AT3G26120 431 / 2e-144 terminal EAR1-like 1 (.1) Lus10002047 [exp] 96 / 9e-23 AT3G26120 167 / 1e-48 terminal EAR1-like 1 (.1) Lus10004591 [exp] 89 / 1e-18 AT1G29400 908 / 0.0 MEI2-like protein 5 (.1.2) Lus10002046 [exp] 86 / 8e-18 AT3G26120 298 / 4e-94 terminal EAR1-like 1 (.1) Lus10011968 [exp] 86 / 9e-18 AT1G29400 900 / 0.0 MEI2-like protein 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF04059 [poplar] [flax] RRM_2 RNA recognition motif 2
Representative CDS sequence Show only first row Show all	>Potri.002G088200.2 pacid=42779135 polypeptide=Potri.002G088200.2.p locus=Potri.002G088200 ID=Potri.002G088200.2.v4.1 annot-version=v4.1 ATGGCTGTTAACGCGCCAAACCCTAAACCTTTGAACCCTTCGGCTTCCCCTTACACGAGAGCCGAAGCAAGTGTGTCTTCGCCATTTCTACCACCAAACA GTGGAATGATCGTGTTACCCTCAAAACTACCCCAGCTTTCACAAGAGATTTATGGCTCCCATCCACAACAGTTGCAATCTCAACTAGCGTGGGTGACTCG ATCAGTGCCCAACATGGTTCCTGGGTTCCTCGCCAATCCCTACCTCTCCGTGCAACACCAGTTGACCCAAGCTTGGGTGTACCAAGAAGCCACTGCCTAC TACAACGTCTATAGGCAGCCTTTCACTGTGCCCTATCCACATCTTTATTACAGTGACAGTGGAAACCAAGGAACATGCTGTACCCCCGGTGAGAATTTAA AAGAATCCGAGGCTGTCAAATTTGAGGAAAGAGTGAAATGTGAGGATTGCTATTCTGGGGTTTTGGGCAACGTGGAAAAGAGGGTTTTTGGTGGAGGTGC CAGGAGGTTTGTTGCACCTCCTCGTTTAAGGGCAAAGCGAAGAGATGGTGGGGTTTTTTTGGGGGAGAAATTATGGGTGCCTAAGACTGAATCTAAGCTG TATGGGGAGAGTAGTGGTGATGATCAGGGGTTGAGTGTTAAGGAGGAGGATGGGGTACTTTCTTGTAGTACCGATGAAGTTTTTTTAGCAGGAAAAACTA CTTTAATGATCAAGAATATTCCAAATCAACTTGGAAGGCATGATTTACTGCGAATACTGGACGTGCACTGTTTGGGAGAGAATCAAAAGGCTATGCAGCG ATTTGATCGTGTTAAATCAGAGTTCGATTTTTTCTACTTGCCCATGGACTTTGTGAGACGAGCAAATCTGGGTTATGCGTTTGTCAACTTCACGAATGCA GCTGGAGCCTTGAGATTTCGCAAAGCTTTCAATAAGTACAAGTGGGATGTCGGTGCAAACCGCAAGACATGTGAAGTATCTTTGGCAACTATCCAGGGAA AAGATGCCCTCTGCAATCGCTACAAGAATTCTGTGTTTCCATGTCATACCAATGCCTATTTGCCTGTTGTTCTACTGCCTGCACGTGATGGGTGGAGGCA GACCGCACCTAGTATTGTTGGAAGGCGTGTAGACCCAGCTTTTCCATTGGAAAGAGGTTGTTTCAGTCGGAGGAAATCCTTCAACAAGTAA
AA sequence Show only first row Show all	>Potri.002G088200.2 pacid=42779135 polypeptide=Potri.002G088200.2.p locus=Potri.002G088200 ID=Potri.002G088200.2.v4.1 annot-version=v4.1 MAVNAPNPKPLNPSASPYTRAEASVSSPFLPPNSGMIVLPSKLPQLSQEIYGSHPQQLQSQLAWVTRSVPNMVPGFLANPYLSVQHQLTQAWVYQEATAY YNVYRQPFTVPYPHLYYSDSGNQGTCCTPGENLKESEAVKFEERVKCEDCYSGVLGNVEKRVFGGGARRFVAPPRLRAKRRDGGVFLGEKLWVPKTESKL YGESSGDDQGLSVKEEDGVLSCSTDEVFLAGKTTLMIKNIPNQLGRHDLLRILDVHCLGENQKAMQRFDRVKSEFDFFYLPMDFVRRANLGYAFVNFTNA AGALRFRKAFNKYKWDVGANRKTCEVSLATIQGKDALCNRYKNSVFPCHTNAYLPVVLLPARDGWRQTAPSIVGRRVDPAFPLERGCFSRRKSFNK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G37140		MCT1	MEI2 C-terminal RRM only like ...		Potri.002G088200 [exp]	0	1
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Potri.010G111400 [exp]	1.00	0.9762
AT5G67060	bHLH	HEC1, bHLH088	HECATE 1, basic helix-loop-hel...		Potri.007G044600 [exp]	2.82	0.9628
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Potri.006G103900 [exp]	3.46	0.9592
					Potri.001G459001 [exp]	4.24	0.9756
AT2G19210			Leucine-rich repeat transmembr...		Potri.001G191701 [exp]	4.35	0.9207
AT2G46950		CYP709B2	"cytochrome P450, family 709, ...		Potri.006G022200 [exp]	5.47	0.9711	Pt-CYP709.2
AT5G53980	HD	ATHB52	homeobox protein 52 (.1)		Potri.011G114500 [exp]	8.24	0.9323
AT1G62420			Protein of unknown function (D...		Potri.004G001400 [exp]	9.00	0.8864
					Potri.004G022300 [exp]	9.48	0.9361
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Potri.010G042400 [exp]	9.94	0.9554	Pt-INO.2

Compare expression of checked genes

Potri.002G088200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.