Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77750 174 / 8e-56 Ribosomal protein S13/S18 family (.1) AT5G14320 130 / 2e-38 EMB3137 EMBRYO DEFECTIVE 3137, Ribosomal protein S13/S18 family (.1.2) AT4G09800 53 / 9e-09 RPS18C S18 ribosomal protein (.1) AT1G34030 53 / 9e-09 Ribosomal protein S13/S18 family (.1) AT1G22780 53 / 9e-09 RPS18A, PFL1, PFL 40S RIBOSOMAL PROTEIN S18, POINTED FIRST LEAVES 1, POINTED FIRST LEAVES, Ribosomal protein S13/S18 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G172600 [exp] 129 / 4e-38 AT5G14320 227 / 5e-77 EMBRYO DEFECTIVE 3137, Ribosomal protein S13/S18 family (.1.2) Potri.002G088300 [exp] 128 / 1e-37 AT5G14320 229 / 5e-78 EMBRYO DEFECTIVE 3137, Ribosomal protein S13/S18 family (.1.2) Potri.005G196600 [exp] 54 / 5e-09 AT4G09800 278 / 2e-96 S18 ribosomal protein (.1) Potri.005G211200 [exp] 52 / 1e-08 AT4G09800 276 / 7e-97 S18 ribosomal protein (.1) Potri.002G051300 [exp] 52 / 2e-08 AT4G09800 275 / 2e-96 S18 ribosomal protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037359 [exp] 182 / 1e-58 AT1G77750 141 / 3e-43 Ribosomal protein S13/S18 family (.1) Lus10006182 [exp] 173 / 3e-54 AT5G14320 132 / 1e-38 EMBRYO DEFECTIVE 3137, Ribosomal protein S13/S18 family (.1.2) Lus10035785 [exp] 138 / 4e-42 AT1G77750 102 / 7e-29 Ribosomal protein S13/S18 family (.1) Lus10025642 [exp] 129 / 8e-38 AT5G14320 222 / 4e-75 EMBRYO DEFECTIVE 3137, Ribosomal protein S13/S18 family (.1.2) Lus10018192 [exp] 128 / 2e-37 AT5G14320 222 / 3e-75 EMBRYO DEFECTIVE 3137, Ribosomal protein S13/S18 family (.1.2) Lus10034179 [exp] 53 / 7e-09 AT1G34030 302 / 3e-107 Ribosomal protein S13/S18 family (.1) Lus10042603 [exp] 52 / 1e-08 AT1G22780 304 / 5e-108 40S RIBOSOMAL PROTEIN S18, POINTED FIRST LEAVES 1, POINTED FIRST LEAVES, Ribosomal protein S13/S18 family (.1) Lus10006914 [exp] 52 / 1e-08 AT4G09800 304 / 5e-108 S18 ribosomal protein (.1) Lus10014676 [exp] 51 / 4e-08 AT1G34030 303 / 1e-107 Ribosomal protein S13/S18 family (.1) Lus10022057 [exp] 51 / 4e-08 AT4G09800 303 / 1e-107 S18 ribosomal protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0303 [poplar] [flax] H2TH PF00416 [poplar] [flax] Ribosomal_S13 Ribosomal protein S13/S18
Representative CDS sequence Show only first row Show all	>Potri.002G088400.1 pacid=42776981 polypeptide=Potri.002G088400.1.p locus=Potri.002G088400 ID=Potri.002G088400.1.v4.1 annot-version=v4.1 ATGCGGTCCCAGGTTGAAGCCCAAGATCCAGTGCATAAAAGCCCATATATCTCCACAGACCCTGTTTCAACATCTTCTCTTCTTCCCTCACTTCGCTCCC AGTGGTGTTCTTCCCCTCTACGAAACATGCTTGGCCTGCGTGGATCAGTTCGATTGCTAACTGAAATCAATCAAAGTCTTCTTCAAAATGCAACATTCCG TTGCCAACGCGTGCAAGGTCTCCGTGTTGGTAACACTGAGATTCCTAATGACAAGAAATTGGAGGTTGCTCTTCAATACATTCATGGAATTGGCCGCAAA AGAGCTCATCAAATACTTTGTGAATTAAGCTTGGTGAACAAACCTACCAAGGATTTGACTGGAATAGAACTCAACTCTCTTAGAGAAGAAGTCTCCAAGT ACCTGACTGGACCAGATCTGGCGCGACGTGTTAAAGCTGATGTACAGAGATTGGTAGACATCGAGTGCTACAGAGGATATAGGCATGTTGAAGGGTTGCC ATGCAGAGGACAGCGCACCTCAACCAATGCTCGGACCAGAAAGGAACACCAAAAGTATGGGTCTCAGGAAGTCGCTGAGCGGATTCGGAAACATCAAGAA AGAAGTCAAGCCAAATGA
AA sequence Show only first row Show all	>Potri.002G088400.1 pacid=42776981 polypeptide=Potri.002G088400.1.p locus=Potri.002G088400 ID=Potri.002G088400.1.v4.1 annot-version=v4.1 MRSQVEAQDPVHKSPYISTDPVSTSSLLPSLRSQWCSSPLRNMLGLRGSVRLLTEINQSLLQNATFRCQRVQGLRVGNTEIPNDKKLEVALQYIHGIGRK RAHQILCELSLVNKPTKDLTGIELNSLREEVSKYLTGPDLARRVKADVQRLVDIECYRGYRHVEGLPCRGQRTSTNARTRKEHQKYGSQEVAERIRKHQE RSQAK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77750			Ribosomal protein S13/S18 fami...		Potri.002G088400 [exp]	0	1
AT3G16980		NRPE9A, NRPD9A,...	RNA polymerases M/15 Kd subuni...		Potri.008G106900 [exp]	2.82	0.8797
AT2G44525			Protein of unknown function (D...		Potri.014G179500 [exp]	4.47	0.8452
AT4G36130			Ribosomal protein L2 family (....		Potri.007G013101 [exp]	5.65	0.8916
AT1G57860			Translation protein SH3-like f...		Potri.006G195400 [exp]	6.08	0.8993
AT1G17880		ATBTF3	basic transcription factor 3 (...		Potri.015G029800 [exp]	6.70	0.8836
AT3G05810			unknown protein		Potri.013G007600 [exp]	9.59	0.8228
AT3G05590		RPL18	ribosomal protein L18 (.1)		Potri.005G023500 [exp]	10.09	0.8897	Pt-RPL18.12
AT3G52580			Ribosomal protein S11 family p...		Potri.001G218700 [exp]	11.22	0.8810
AT1G26880			Ribosomal protein L34e superfa...		Potri.017G082200 [exp]	11.48	0.8816	Pt-RPL34.5
AT1G77710			unknown protein		Potri.002G087200 [exp]	12.96	0.8396

Compare expression of checked genes

Potri.002G088400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.