Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24620 99 / 2e-26 EF hand calcium-binding protein family (.1) AT1G66400 87 / 3e-22 CML23 calmodulin like 23 (.1) AT1G18210 86 / 2e-21 Calcium-binding EF-hand family protein (.1.2) AT5G37780 84 / 3e-21 ACAM-1, TCH1, CAM1 TOUCH 1, calmodulin 1 (.1.2.3) AT1G66410 84 / 3e-21 ACAM-4, CAM4 calmodulin 4 (.1.2) AT5G21274 83 / 1e-20 ACAM-6, CAM6 calmodulin 6 (.1) AT3G43810 82 / 2e-20 CAM7 calmodulin 7 (.1) AT2G41110 82 / 2e-20 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2) AT2G27030 82 / 2e-20 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3) AT3G56800 82 / 2e-20 ACAM-3, CAM3 calmodulin 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G107100 [exp] 109 / 2e-30 AT1G24620 220 / 2e-73 EF hand calcium-binding protein family (.1) Potri.008G134300 [exp] 101 / 3e-27 AT1G24620 219 / 2e-73 EF hand calcium-binding protein family (.1) Potri.015G032600 [exp] 86 / 6e-22 AT5G37780 284 / 3e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.012G041000 [exp] 86 / 6e-22 AT5G37780 283 / 9e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.016G024700 [exp] 82 / 2e-20 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.009G021500 [exp] 82 / 2e-20 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.006G026700 [exp] 82 / 2e-20 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.001G222200 [exp] 83 / 3e-20 AT2G27030 304 / 6e-107 calmodulin 5 (.1.2.3) Potri.012G048200 [exp] 80 / 3e-19 AT1G18210 188 / 8e-62 Calcium-binding EF-hand family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007816 [exp] 164 / 2e-52 AT1G24620 69 / 7e-15 EF hand calcium-binding protein family (.1) Lus10028913 [exp] 94 / 6e-25 AT1G24620 204 / 5e-68 EF hand calcium-binding protein family (.1) Lus10004330 [exp] 94 / 7e-25 AT1G24620 207 / 2e-69 EF hand calcium-binding protein family (.1) Lus10018012 [exp] 92 / 5e-24 AT1G18210 195 / 2e-64 Calcium-binding EF-hand family protein (.1.2) Lus10027283 [exp] 82 / 3e-20 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10038981 [exp] 82 / 3e-20 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10037423 [exp] 82 / 3e-20 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10041288 [exp] 82 / 3e-20 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10038088 [exp] 84 / 4e-20 AT3G07490 150 / 7e-46 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10006644 [exp] 84 / 7e-20 AT3G07490 148 / 3e-45 calmodulin-like 3, ARF-GAP domain 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair CL0220 [poplar] [flax] EF_hand PF13833 [poplar] [flax] EF-hand_8 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.002G088500.1 pacid=42778434 polypeptide=Potri.002G088500.1.p locus=Potri.002G088500 ID=Potri.002G088500.1.v4.1 annot-version=v4.1 ATGGCACAGCTTGGATCCCTTTCTGCTGAATTAGAGTCACTGAACCAAGTCCTGAGCCTGATGGAGGCGTTTAGAGCCTTCGATTCAGACAATGATGGCT TTATTACAGCTGCTGAGCTTGGCGGCATCTTGGGGTCACTTGGATACAACGCAAGTGAACAAGATGTGAGTGCAATGATGCAGCAAGGAGACACTAACAA GGATGGTTTGCTAAGCATGCAAGAGTTTTTGGAGATGAACACCAAGGATATGGAGCTCGGTGAACTTGCAAACTTGCTCCAAACTGCCTTTGATGCTCTT GATGTTGATGTTGATGGTATTGTTACTGCAGAGGAATTGTACGAGGCTACAGTGAATGGCGGGTTAGATTTGTCTTTGGAGGATTGCCAAGGCATTATTG CTTCCATAGATGCAGATGGTGATGGAGCTGTTAGCTGCAATGACTTCAAGCTGATTGTTAATTCCCTTCAGATCCTAGAAAATTCATTTCTGATGTAG
AA sequence Show only first row Show all	>Potri.002G088500.1 pacid=42778434 polypeptide=Potri.002G088500.1.p locus=Potri.002G088500 ID=Potri.002G088500.1.v4.1 annot-version=v4.1 MAQLGSLSAELESLNQVLSLMEAFRAFDSDNDGFITAAELGGILGSLGYNASEQDVSAMMQQGDTNKDGLLSMQEFLEMNTKDMELGELANLLQTAFDAL DVDVDGIVTAEELYEATVNGGLDLSLEDCQGIIASIDADGDGAVSCNDFKLIVNSLQILENSFLM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G24620			EF hand calcium-binding protei...		Potri.002G088500 [exp]	0	1
AT1G73040			Mannose-binding lectin superfa...		Potri.012G140001 [exp]	2.00	0.9069
AT1G70880			Polyketide cyclase/dehydrase a...		Potri.004G020000 [exp]	2.44	0.9054
AT4G25970		PSD3, PSD2	phosphatidylserine decarboxyla...		Potri.002G127000 [exp]	3.46	0.9084
AT1G10155		ATPP2-A10	phloem protein 2-A10 (.1)		Potri.015G120200 [exp]	10.00	0.8853
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Potri.015G105100 [exp]	12.04	0.9112	Pt-CLPC.2
AT4G13250		NYC1, NYC	NON-YELLOW COLORING 1, NAD(P)-...		Potri.018G081200 [exp]	17.02	0.9057
AT3G06980			DEA(D/H)-box RNA helicase fami...		Potri.010G004700 [exp]	23.15	0.9086
AT2G38970			Zinc finger (C3HC4-type RING f...		Potri.001G082150 [exp]	26.32	0.8976
					Potri.014G030700 [exp]	28.46	0.8783
AT5G56350			Pyruvate kinase family protein...		Potri.013G060400 [exp]	28.56	0.8761

Compare expression of checked genes

Potri.002G088500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.