Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-NIA1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77760 1394 / 0 GNR1, NIA1 nitrate reductase 1 (.1) AT1G37130 1381 / 0 NIA2-1, CHL3, B29, NR2, NIA2, ATNR2 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) AT3G01910 205 / 3e-58 AT-SO, ATSO, SOX sulfite oxidase (.1.2.3) AT5G17770 167 / 3e-46 CBR1, ATCBR NADH:cytochrome B5 reductase 1 (.1) AT5G20080 153 / 7e-41 FAD/NAD(P)-binding oxidoreductase (.1) AT5G48810 87 / 6e-20 B5#3, ATB5-B, ATCB5-D ARABIDOPSIS CYTOCHROME B5 ISOFORM D, cytochrome B5 isoform D (.1) AT2G32720 86 / 1e-19 B5 #4, B5#4, ATCB5-B ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) AT5G53560 81 / 6e-18 B5#2, ATB5-A, ATCB5-E ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) AT1G26340 80 / 2e-17 B5 #6, B5#6, ATCB5-A ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) AT1G60660 65 / 2e-12 B5 #5, B5#5, ATCB5LP ARABIDOPSIS CYTOCHROME B5-LIKE PROTEIN, cytochrome B5-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G172400 [exp] 1656 / 0 AT1G37130 1400 / 0.0 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) Potri.001G330900 [exp] 201 / 6e-57 AT3G01910 686 / 0.0 sulfite oxidase (.1.2.3) Potri.004G194400 [exp] 167 / 3e-46 AT5G17770 428 / 4e-153 NADH:cytochrome B5 reductase 1 (.1) Potri.009G157000 [exp] 163 / 9e-45 AT5G17770 421 / 3e-150 NADH:cytochrome B5 reductase 1 (.1) Potri.006G218600 [exp] 161 / 8e-44 AT5G20080 511 / 0.0 FAD/NAD(P)-binding oxidoreductase (.1) Potri.013G067300 [exp] 160 / 1e-43 AT5G17770 461 / 6e-166 NADH:cytochrome B5 reductase 1 (.1) Potri.010G246800 [exp] 154 / 1e-41 AT5G17770 379 / 1e-133 NADH:cytochrome B5 reductase 1 (.1) Potri.002G242500 [exp] 82 / 5e-18 AT2G32720 221 / 7e-76 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.012G024600 [exp] 81 / 1e-17 AT5G53560 163 / 5e-53 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038977 [exp] 1441 / 0 AT1G77760 1397 / 0.0 nitrate reductase 1 (.1) Lus10027270 [exp] 1431 / 0 AT1G77760 1380 / 0.0 nitrate reductase 1 (.1) Lus10035402 [exp] 1284 / 0 AT1G77760 1277 / 0.0 nitrate reductase 1 (.1) Lus10031005 [exp] 565 / 0 AT1G77760 559 / 0.0 nitrate reductase 1 (.1) Lus10012532 [exp] 191 / 2e-50 AT3G01910 616 / 0.0 sulfite oxidase (.1.2.3) Lus10035213 [exp] 182 / 2e-50 AT3G01910 615 / 0.0 sulfite oxidase (.1.2.3) Lus10032048 [exp] 181 / 4e-50 AT3G01910 620 / 0.0 sulfite oxidase (.1.2.3) Lus10026774 [exp] 177 / 9e-50 AT5G17770 425 / 1e-151 NADH:cytochrome B5 reductase 1 (.1) Lus10008407 [exp] 176 / 5e-49 AT5G17770 427 / 4e-152 NADH:cytochrome B5 reductase 1 (.1) Lus10005682 [exp] 165 / 2e-45 AT5G17770 474 / 6e-171 NADH:cytochrome B5 reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00173 [poplar] [flax] Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain CL0072 [poplar] [flax] Ubiquitin PF00174 [poplar] [flax] Oxidored_molyb Oxidoreductase molybdopterin binding domain CL0091 [poplar] [flax] NAD_Ferredoxin PF00175 [poplar] [flax] NAD_binding_1 Oxidoreductase NAD-binding domain CL0076 [poplar] [flax] FAD_Lum_binding PF00970 [poplar] [flax] FAD_binding_6 Oxidoreductase FAD-binding domain CL0159 [poplar] [flax] E-set PF03404 [poplar] [flax] Mo-co_dimer Mo-co oxidoreductase dimerisation domain
Representative CDS sequence Show only first row Show all	>Potri.002G088600.1 pacid=42777026 polypeptide=Potri.002G088600.1.p locus=Potri.002G088600 ID=Potri.002G088600.1.v4.1 annot-version=v4.1 ATGGGAGCCTCGGTCGACAACCGTCAATTCCACGTCGAACCCACTTTAAACGGGGTGGCTCGTCCCTTCAAATCCGTTTCAAACCACCGGCCCAACTCTC CGGTTCGGGCGTTGAACTTCTCGAACCAAGACTTTACTCGGTACAACCAGAAACCAGTTCCAACATTGGAGGAAGAAGACTCTTCAAGTGAAGATGAAGC TGATTATAAGGATCTGATCCGCAAAGGTAACAGTGAATTAGAGCCGTCGATTTTTGATCCACGAGATGAAGGAACGGCTGATAAGTGGATCGAACGCAAC CCTTCCATGGTCCGTCTTACAGGGAAACATCCCTTCAACTCTGAACCGCCATTGGTTCGTCTCATGCACCACGGGTTCATTACACCGGTCCCACTTCACT ATGTTCGCAACCATGGTTCTGTTCCAATGTCCACGTGGCAAGACTGGACTGTCGAGGTTTGCGGTCTGGTTAAAAGGCCAGCCCGTTTCACCATGGAGCA GCTAGTCAACGAATTCCCAGCTCGTGAACTCCCTGTCACTCTAGTTTGCGCAGGTAACAGACGCAAAGAGCAAAACATGGTGAAACAGACAGTTGGGTTC AACTGGGGTGCTGCGGGGTTGTCTACTTCAGTGTGGCGTGGCGTGCCATTGCATTTGCTGCTCAAGAAGTGTGGGATCTACAGCCGTAAAAATGGAGCCC TCAATGTTTGTTTCGAAGGTGCTGAGGACCTGCCAGGTGGCGGTGGATCAAAGTACGGGACTAGCATCAAGAAAGAGGTTGCTTTGGATCCATCTCGTGA TATTATTTTAGCCTATATGCAAAACGGTGAGCTCTTGTCGCCGGACCATGGGTTTCCGGTGAGGTTGATCATACCAGGTTTCATTGGTGGGCGCATGGTA AAATGGTTAAAGAGAATAATTGTTACCACTAAAGAGTCAGATAGTTACTATCACTACATGGACAACAGAGTACTGCCCTCGCATGTTGATACAGAGCTAG CTAATGCCGAAGCCTGGTGGTACAAGACAGAGTATATCATCAATGAGCTGAATATAAATTCCGCGATCACAACGCCTTCTCACGAAGAGATATTGCCAAT TAACTCATGGACAACTCAGAGCCCGTTCACGCTGAAGGGATACGCATATTCCGGCGGCGGTAAGAAAGTGACGCGTGCTGAGGTGACTTTGGACGGTGGA GAAACGTGGCGGGTCTGTAACTTGGACCACCCAGAGAAGCCCAACAAGTATGGCAAATACTGGTGTTGGTGCTTCTGGTCCCTGGAGGTGGAGATACTGG AGCTACTTGGAGCCAAGGAGATTGCAGTCCGGGCCTGGGATGAAACCCTTAACACCCAGCCGGAGAAGCTCAATTGGAATGTCATGGGAATGATGAACAA CTGCTGGTTCCGGGTTAAAACAAATGTCTGCAAACGTCACAAGGGTGAGATTGGAATCGTGTTCGAGCACCCCACCGTTCCGGGCAACCAGTCCGGTGGG TGGATGGCTAAGGAAAGGCACCTAGAGAATTCATCGGAGAATATCCGAACTCTGAAGAAAAGTGTTTCAACACCCTTCTTCATGAACACTTCATCAAAAG CTTTTTCCATGGCTGAAGTAAAAAAACATAATTCAGCTGAATCGGCGTGGATAATTGTTCATGGTCATGTCTATGATTGCACTCGCTTCCTTAAAGACCA TCCCGGTGGCACCGATAGCATTTTAATCAATGCCGGTACTGATTGCACTGAAGAATTCGATGCCATACACTCTGATAAAGCCAAGAAGATGCTTGAGGGT TATCGGATTGGAGAATTGGTCAATTCAACCGCTTACACATCTGACTCGAACGCGTCTTCGCCTAATAGCTCAATGCATGGTGCGTCCAATATAGCACAGA TGAATTTGGCTCCTATCAAAGAAATTGCCCCAGCAAGAAATGTTGCTCTTGTCCCGCGTGAAAAAATCCAATGCAAGCTAGTGAAGAAGGAAATTCTCTC TCATGATGTGCGTCTTTTTCGATTTGCATTGCCATCAGAGGATCAAGTACTGGGGTTGCCAGTAGGGAAGCACATTTTTTTATCCGCTACCATCGATGAT AAGCTGTGCATGCGAGCTTATACGCCAGCCAGCACCATTGATGCGGTGGGGTTTTTTGATCTTGTGATTAAAGTTTATTTTAAAGGCGTGCATCCAAAGT TCCCTAATGGAGGGCAGATGTCACTGTACCTTGACTCGTTATCGCTGGGGTCTGTGGTAGACGTGAAGGGTCCATTGGGTCACATTGAATATGCTGGTCG CGGCAACTTTATGGTTCATGGCAAACCCAAGTTTGCAAAGAAACTGGCTATGTTAGCAGGTGGTACAGGTATCACACCGATTTATCAAGTGATTCAAGCT ATTTTGAAAGACCCAGAAGACGATACTGAGATGTATGTGGTGTATGCGAACCGCACCGAGGACGATATTCTGCTGAGGGACGAGCTTGATTCTTGGGTGA AGGAACACGAGAGATTAAAGGTGTGGTATGTGGTTCAAGAGTCTATCAAGGAAGGCTGGCTGTACAGTACTGGGTTCGTTACAGAGAAAATCCTGCGCGA GCATGTTCCGGAAGGATCAAGTGATGCTCTGGCTCTGGCTTGTGGTCCTCCGCCGATGATTCAATTTGCTGTGCAGCCAAATTTAGAGAAAATGAACTAC GATATCAAGAATTCCTTACTAGTTTTCTAG
AA sequence Show only first row Show all	>Potri.002G088600.1 pacid=42777026 polypeptide=Potri.002G088600.1.p locus=Potri.002G088600 ID=Potri.002G088600.1.v4.1 annot-version=v4.1 MGASVDNRQFHVEPTLNGVARPFKSVSNHRPNSPVRALNFSNQDFTRYNQKPVPTLEEEDSSSEDEADYKDLIRKGNSELEPSIFDPRDEGTADKWIERN PSMVRLTGKHPFNSEPPLVRLMHHGFITPVPLHYVRNHGSVPMSTWQDWTVEVCGLVKRPARFTMEQLVNEFPARELPVTLVCAGNRRKEQNMVKQTVGF NWGAAGLSTSVWRGVPLHLLLKKCGIYSRKNGALNVCFEGAEDLPGGGGSKYGTSIKKEVALDPSRDIILAYMQNGELLSPDHGFPVRLIIPGFIGGRMV KWLKRIIVTTKESDSYYHYMDNRVLPSHVDTELANAEAWWYKTEYIINELNINSAITTPSHEEILPINSWTTQSPFTLKGYAYSGGGKKVTRAEVTLDGG ETWRVCNLDHPEKPNKYGKYWCWCFWSLEVEILELLGAKEIAVRAWDETLNTQPEKLNWNVMGMMNNCWFRVKTNVCKRHKGEIGIVFEHPTVPGNQSGG WMAKERHLENSSENIRTLKKSVSTPFFMNTSSKAFSMAEVKKHNSAESAWIIVHGHVYDCTRFLKDHPGGTDSILINAGTDCTEEFDAIHSDKAKKMLEG YRIGELVNSTAYTSDSNASSPNSSMHGASNIAQMNLAPIKEIAPARNVALVPREKIQCKLVKKEILSHDVRLFRFALPSEDQVLGLPVGKHIFLSATIDD KLCMRAYTPASTIDAVGFFDLVIKVYFKGVHPKFPNGGQMSLYLDSLSLGSVVDVKGPLGHIEYAGRGNFMVHGKPKFAKKLAMLAGGTGITPIYQVIQA ILKDPEDDTEMYVVYANRTEDDILLRDELDSWVKEHERLKVWYVVQESIKEGWLYSTGFVTEKILREHVPEGSSDALALACGPPPMIQFAVQPNLEKMNY DIKNSLLVF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77760		GNR1, NIA1	nitrate reductase 1 (.1)		Potri.002G088600 [exp]	0	1	Pt-NIA1.1
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073491 [exp]	1.00	0.9232
AT1G80300		ATNTT1	nucleotide transporter 1 (.1)		Potri.003G058900 [exp]	4.69	0.9133	AATP1.2
AT1G11360			Adenine nucleotide alpha hydro...		Potri.013G150200 [exp]	8.48	0.8962
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Potri.003G145500 [exp]	10.00	0.8942
AT2G41560		ACA4	"autoinhibited Ca\(2+\)-ATPase...		Potri.003G204000 [exp]	17.60	0.9002
AT5G43060			Granulin repeat cysteine prote...		Potri.014G024100 [exp]	22.04	0.8958	RD21.1
AT1G03400			2-oxoglutarate (2OG) and Fe(II...		Potri.010G107500 [exp]	29.73	0.8866
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Potri.012G112000 [exp]	32.86	0.8783	Pt-ERD1.4
AT1G54570			Esterase/lipase/thioesterase f...		Potri.013G033000 [exp]	33.63	0.8686
AT1G11340			S-locus lectin protein kinase ...		Potri.011G035901 [exp]	35.07	0.8754

Compare expression of checked genes

Potri.002G088600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.