Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G36990 281 / 5e-87 unknown protein AT4G08510 243 / 6e-73 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G172100 [exp] 707 / 0 AT1G36990 250 / 3e-75 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028037 [exp] 414 / 2e-138 AT1G36990 370 / 3e-121 unknown protein Lus10003744 [exp] 385 / 8e-127 AT1G36990 361 / 9e-118 unknown protein Lus10029655 [exp] 367 / 1e-120 AT1G36990 364 / 9e-120 unknown protein Lus10042697 [exp] 360 / 4e-118 AT1G36990 352 / 4e-115 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G089100.1 pacid=42779043 polypeptide=Potri.002G089100.1.p locus=Potri.002G089100 ID=Potri.002G089100.1.v4.1 annot-version=v4.1 ATGGAAAGAAGTGAGCCCTCATTAGTACCAGAATGGTTGAGAAGTCCAGGCAGTGTTTCTGGGGCTGGCAATTCAGCCCACCACTTCGCATCGTCTTCTT CCCACTCAGATGTCTCTTCATTGGGAAATCACACCAGAAATAGGAGTTTTAAGAGCATAAATGATTTTGATTCCCCTCGCTCTGCTTTTCTGGATCGGCA ATCTTCATCTAATTCACGGAGAAGTTCTATCAATGGGTCTGCAAAGCATCCTTACAGTAGTTTTAGTAGAAGTCACCGGGATAAAGATCGAGAAAGGGAC AAAGAGAGATCAAGTTTTGGAGACCATTGGGACAGAGACTCTTCTGATCCCTTGGGAGGCATATTAACCAGTAGGAACGAGAAGGACACCTTGCGCCATT CCCATTCAATGGTATCGAGGAAACACAGTGAGGTGATGCTGCGCAGAGCTGCATCGGAATTAAAAAATGGGAGCAGCAGCAATCACGCGAACAGCAATGG TTTGGTTTCTGGGGGTAGTTTTGGTAGTAGCAGTCAGAAGGCAGTATTTGAAAAGGATTTTCCCTCACTTGGAAATGAGGATAGGGAAGGAGTGCCTGAT ATAGCAAGAGTTTCGTCTCCTGGTTTAAGCTCAAGTGTTCAGAACTTGCCTGTTGGTAGTTCTGCTTTGATTGGTGGAGAGGGATGGACATCAGCTCTGG CAGAGGTGCCAACTATTATTGGAAACAGCAGTACGAGTTCTTCATCTACTGCACAGACTGTTGCTGCTTCTTCATCTGGCACTTCAAGTGTAATGGCTGG TCTCAATATGGCTGAAGCATTGACTCAAGCTCCATTAAGAACTCGCACTGCTCCACAGCTGTCTGTCCAGACACAAAGGCTTGAGGAATTGGCTATTAAG CAATCAAGGCAGTTAATACCTGTGACTCCCTCTATGCCTAAGAATTTGGTTCTCAGTTCATCTGATAAATCAAAGCCTAAAACAGGAATCAGACCTGGTG AGATGAATATGGCTGCCAAGAGCTCACAACAGCAGTCTTCATTGCACCCTGCTAATCAATCTTCTGTAGGGGTACATGTAAAATCTGATGCAACAAAGAC ATCGGGGAAGCTATTTGTTCTCAAACCGGTATGGGAAAATGGTGTCTCTCCTTCTCCAAAGGATGCTGCTAGTCCAAATACTTCCAGCAGAACTGCAAAT AGTCAACTTGCTGCTCCTTCAGTTCCATCTCCGCCTCTGAGGAGTCCAAACAACCCAAAGATTTCTTCAGTGGATCGCAAGCCAACTAGCTTGAATTTAA ATTCAGGATTTGGTGGGGAAAAGAGAACCCAGAGCAGGAATAATTTCTTTAATGACCTGAAGAAGAAAACTGCTATGAACACTTCTTCAGTTGCAGATTC AGCATCTGTTGTTTTGTCTCCGGCCAGTGAGAAATCTTGTGAAGTAATTAAGGAAGTTGTCAGTGCTCCTGCAAGTCCTCAAGCTGTTCAGAATGGTGCT GAACTGACTAGCAATGGTGGGACCTTAGAAGAGGTTCAAAGATTTTCTGAGGAAGAGGTTTCTTTCCTTCGTTCTCTAGGGTGGGAGGAAAATTCAGGGG AGGAAGAAGGACTCACAGAGGAAGAGATTAATGCCTTCTTGCAAGAGTATATTACAAAGAAGCCGTCCCTGAAAGTGTGTCGAGGTATGCTGCAAAATCC GAATGAATGCCATGCTGCGACTTTGGGTGGAGCTTCCTTTGCATCCAGCTCATCTGACTCTGGATCAGATGCTTAA
AA sequence Show only first row Show all	>Potri.002G089100.1 pacid=42779043 polypeptide=Potri.002G089100.1.p locus=Potri.002G089100 ID=Potri.002G089100.1.v4.1 annot-version=v4.1 MERSEPSLVPEWLRSPGSVSGAGNSAHHFASSSSHSDVSSLGNHTRNRSFKSINDFDSPRSAFLDRQSSSNSRRSSINGSAKHPYSSFSRSHRDKDRERD KERSSFGDHWDRDSSDPLGGILTSRNEKDTLRHSHSMVSRKHSEVMLRRAASELKNGSSSNHANSNGLVSGGSFGSSSQKAVFEKDFPSLGNEDREGVPD IARVSSPGLSSSVQNLPVGSSALIGGEGWTSALAEVPTIIGNSSTSSSSTAQTVAASSSGTSSVMAGLNMAEALTQAPLRTRTAPQLSVQTQRLEELAIK QSRQLIPVTPSMPKNLVLSSSDKSKPKTGIRPGEMNMAAKSSQQQSSLHPANQSSVGVHVKSDATKTSGKLFVLKPVWENGVSPSPKDAASPNTSSRTAN SQLAAPSVPSPPLRSPNNPKISSVDRKPTSLNLNSGFGGEKRTQSRNNFFNDLKKKTAMNTSSVADSASVVLSPASEKSCEVIKEVVSAPASPQAVQNGA ELTSNGGTLEEVQRFSEEEVSFLRSLGWEENSGEEEGLTEEEINAFLQEYITKKPSLKVCRGMLQNPNECHAATLGGASFASSSSDSGSDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G36990			unknown protein		Potri.002G089100 [exp]	0	1
AT1G03910			unknown protein		Potri.006G118700 [exp]	3.74	0.8719
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Potri.005G026800 [exp]	3.74	0.9053
AT1G36990			unknown protein		Potri.005G172100 [exp]	4.24	0.8655
AT3G14470			NB-ARC domain-containing disea...		Potri.011G005900 [exp]	4.89	0.8752
AT2G03820			nonsense-mediated mRNA decay N...		Potri.017G137500 [exp]	5.09	0.8587
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Potri.014G128300 [exp]	5.29	0.9044
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Potri.013G018700 [exp]	8.48	0.8908
AT3G62470			Pentatricopeptide repeat (PPR)...		Potri.014G121400 [exp]	8.48	0.8887
AT4G25880		APUM6	pumilio 6 (.1.2.3)		Potri.006G165100 [exp]	9.74	0.8880	Pt-PPD1.4
AT5G41790		CIP1	COP1-interactive protein 1 (.1...		Potri.001G094200 [exp]	9.79	0.8614	Pt-CIP1.1

Compare expression of checked genes

Potri.002G089100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.