Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77800 937 / 0 PHD finger family protein (.1.2) AT2G31650 123 / 6e-28 SDG27, TRX1, ATX1 SET DOMAIN PROTEIN 27, homologue of trithorax (.1) AT1G05830 118 / 1e-26 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) AT5G53430 105 / 2e-22 SET29, ATX5, SDG29 SET domain group 29 (.1) AT4G27910 105 / 2e-22 SDG16, ATX4 SET domain protein 16 (.1) AT3G61740 98 / 3e-20 SDG14, ATX3 SET domain protein 14 (.1.2) AT3G14740 83 / 2e-16 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT4G21070 57 / 1e-07 ATBRCA1 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) AT1G04020 46 / 0.0002 ROW1, ATBARD1, BARD1 breast cancer associated RING 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G171800 [exp] 2325 / 0 AT1G77800 522 / 2e-160 PHD finger family protein (.1.2) Potri.002G232800 [exp] 114 / 2e-25 AT1G05830 1261 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.014G146300 [exp] 114 / 3e-25 AT1G05830 1273 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.012G013900 [exp] 103 / 5e-22 AT5G53430 1423 / 0.0 SET domain group 29 (.1) Potri.015G014300 [exp] 101 / 3e-21 AT5G53430 1322 / 0.0 SET domain group 29 (.1) Potri.002G170600 [exp] 95 / 3e-19 AT3G61740 1140 / 0.0 SET domain protein 14 (.1.2) Potri.011G103100 [exp] 90 / 1e-18 AT3G14740 339 / 1e-115 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.014G098400 [exp] 91 / 4e-18 AT3G61740 1120 / 0.0 SET domain protein 14 (.1.2) Potri.001G382500 [exp] 86 / 3e-17 AT3G14740 338 / 3e-115 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009785 [exp] 804 / 0 AT1G77800 388 / 3e-115 PHD finger family protein (.1.2) Lus10024778 [exp] 647 / 0 AT1G77800 533 / 6e-174 PHD finger family protein (.1.2) Lus10024777 [exp] 514 / 2e-166 AT1G77800 385 / 7e-120 PHD finger family protein (.1.2) Lus10009786 [exp] 174 / 5e-49 AT1G77800 155 / 2e-43 PHD finger family protein (.1.2) Lus10026725 [exp] 108 / 2e-23 AT1G05830 1272 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10025508 [exp] 107 / 4e-23 AT1G05830 1256 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10038142 [exp] 93 / 6e-20 AT3G14740 315 / 1e-106 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10024779 [exp] 85 / 4e-19 ND 72 / 7e-16 Lus10012626 [exp] 77 / 8e-14 AT3G61740 1077 / 0.0 SET domain protein 14 (.1.2) Lus10042494 [exp] 69 / 9e-13 AT3G14740 224 / 1e-73 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [poplar] [flax] zf-FYVE-PHD PF13831 [poplar] [flax] PHD_2 PHD-finger CL0390 [poplar] [flax] zf-FYVE-PHD PF13832 [poplar] [flax] zf-HC5HC2H_2 PHD-zinc-finger like domain
Representative CDS sequence Show only first row Show all	>Potri.002G089400.2 pacid=42776951 polypeptide=Potri.002G089400.2.p locus=Potri.002G089400 ID=Potri.002G089400.2.v4.1 annot-version=v4.1 ATGACCGGAGGCCGATGCCACCGGCGAAAGAAGATGATGGGTAGGGGTCCTGATGGAGGTTGCGGCGCTGATGAGAGGCCTTGCCGTTCAGTTTCGAGGG TTCCGGCAGCCAATTCCCTCGCAAACGAACCTGAAATACCTCAACCAACAGTAAAGAAACCGACTTCACTCGAAGTCGATTTCTTCTCCCAAGCTAATAA GGTCTTAAGCGTGCACTCGCCATTCGATGTCGCAGAGAACGCGTCTGGTTCTGGTGTTCCAAGTTTTCCAATCTTGTCTACTTTGCCTAGCCGGCTGGCT AGTTTGTTGAGGCAATCAGATGGCAGTAGAAAGAAACATAAAAGGTCTCATTCTGGCGTGGACAAGAAGTCTTCATCACGGGTGAGTGACAGGTCTAAAG GAGGGAATATATGGGTCGAGACTGAAGAGTTCTTTAGGGGATTGACATTGCCTGATATTGATGCTTTGTTTGAACTATCTTCTTTATTTAATTCTTTAGG TTATACTAAGTGTTTCTATATTCCTTATATTGGAAATGAGAAAATAGAGAGAATTGAGACTACTGCCACAAATGTGAAAACTGAGGAAAATCTGAATGGG AAGGCTGAAGGAAACAACACTAATGAACAATCTGACACAAGTGCCAATGTGGAGAATGCAAATGATAATGTGGAAATGGATTGTGTGGATGGAAATGGAA AAAAACTCATAGTGAAAGATGAGGGCAGTCAAGAGGATGGGCAGTTTATGGAAATCGACAGCGTGGCTACTCAAAGCGATGGAGCTGAGTGTTTGACCCA GGAGGAAGCAAATGGTTGCTCTGTTTCTGATTTTTCTAGCAGTGTAGAATGGCTTTTAGGCTGTAGGAATAGGAATATATTGACTTCTGAAAGGCCTTCC ATGAAGCGGAAGCTTTTAGGCAGTGATGCAGGATTGGAGAAGGTTTTGGTTGGTCGTCCTTGTGAAGGAAACTTGTCATTATGTGATTTTTGCTGCAAGG GCGAGACGGGTAATGTTTCAAACAGGTTAATTGTTTGCTCTTCTTGCAAGGTTGCCGTTCATCTTAAGTGTTATGGTGTGCAAGGGGATGTAAACAAGTT TTGGTTGTGTTCATGGTGCAAGCAGAAGAGTGATGACAACGATTTAGTCAAGCAGTCTTGTGTGCTTTGTCCAAAGGAGGGTGGAGCTTTGAAACCTGTT AATGTAGAAAATGGTGGGTCTGTTCTTGAGTTTGTGCACTTGTTTTGTTCCCAGTGGACGCCTGAGGTCTATATAGAGGACTTAACGAAGATGGAGCCAG TTATGAATGTGGGGGGAATTAAGGAGACCCGAAGAAAATTAGTCTGTAATGTATGCAAGGTGAAGTCTGGTACCTGTGTTCGGTGCAGTCATGGAACCTG CAGAACTTCTTTCCATCCTATATGTGCTAGGGAAGCAAGACATAGGATGGAGGTCTGGGGAAAATATGGTTCCAATAATGTTGAATTACGAGCTTTTTGC TCAAAGCACAGTGAACTCCCTGATGATAAGGATACCCATCAATTAGGAGAGGCTTTTGTGGCTGCCAGCCACAACTGCTCTGTTGCCAGCCATGATCCAT CAGAATTGCAAATGGACAAACAACACAAGTTAAATAGTGGCCGAAATGGAGATAAACTTGCAGTCCACATAGAAACTTCTGATACTAATTCTGGTAAACC TGGTGATGGTGAATCATGGGAAATAGAATTGAATGATTTGAAATCAGATGCCGTACCTTTGTCAGAATCTGGGGATGTGGACCAACTCATTGATACAGGG ATATTTGAGAGAGGTGGCTATGGGGATGCTAGCCCTTCTGACTTCCAAAATCTTTTGCTGATTTTGAAGAAGCTAATCGATCAAGGAAAAGTCAATGCAG AAGAATTGACAACGGAAATTGGCATCTCACCTGATTCTTTAATTCCAACACTCGCTGAAGTTAATTTGGTCCCTGATTTTCAGGCCAAATTAGTCAGGTG GTTTCAAAATCATGTTCACTTGGCTAGTCGACATAAAAATTTGAAAGTTCAACTAAAATCCACAATTTTTCCAAAGGCTGAGATTGGAACAGCAGATCAT TCTGATGGTATAACTGTATCAGAGAGTGATATTACAGATGCTGTTGCTGTTAAGTCAGTTCCCCCAGGGAGAAGAACCAAAAGTAACATTAGGATTTTGA GGGACAACAGTGTAATTTGCTCACCTGAGGAAATTTTGAGCGCCAACGGTATCATAATGAATGGGATTAAAGCCGTTGATCAACTGGGAAGTGAAGAACC AGAAAATTTTAGGGAAGTATCCATCCCTAATGTGGCTGAAAAGATTCCTGATGTGTTACAAGACTCTTCGGTTTTGCATTTGCCTAAAAGTGAAGATGGA AGCCTTTCTGTAAAAATTGAACAAGTGCACGCTGCTATTCCAGACAAGAGTAATTCAATTAATACAGATGGGGCAGTTTCTGTTTTTTCAGATGTTAACT TTGTCATCCCTAATCTCATAGAGCCAGAAGCGTATTCTAATTCTTATGTCCATCCATGTATACATGAGAAGCTGTCACAGATACAAAGTGGAATGCTTTT GCAGAAAGGAATTTCTGAACTTGAAGGTTCAAAAGACGGAGAAATCTCTCGTTTGGAGGCCTCTTCCAATGCCAGTGTCTGTTGTAATCATCGGCATAAA CACTCCAAGTGCAATGACTTGATCTGTAGTTCCAGTGAAGTAAATCCAGAGCAGCTGGCTAAAGCTAAGAAACTGGGAATTCTCAAACTATCTCCGGTGG ACGAAGTGGAAGGAGAAATTATCTATTTTCAGAATAGGTTACTTGGCAATGCAGTTGCAAGGAAGCACTTTACTGATAATTTAATATCTAAGGTTGCTAG GCATCTACCCCAGGAGATAGATGCATCTAGGGGGCAAAGGTGGGATGAAGTACTTGTTAACCGGTATCTTTGTGACGTTAGAGAAGCAAAGAAGCAGGGC AGGAAAGAAAGAAGGCATAAGGAAGCCCAGGCTGTTCTGGCTGCAGCAACTGCTGCTGCAGCAGCTTCTTCTCGGACTTCATCATTTAGGAAAGATGCCT TGGATGAATCTGCTCACCAGGAGAAATATAATACTTCTAATGGGAGGGCTGGCATTTCTTCTCAGTTGATGCCACGTCCAAAAGAAATGCTTTCAAGGGT GGCTGTTCCAAGGATTTCATCAGAGAAGTACTCTGATTTTGTTCAGTCAATTTCAGATTTTTCTAAAGATCACCCTGGACCATGTGATATATGCAGACGA TTTGAGACAATACTGAACCCTATTTTAGTCTGCTCTGGCTGCAAGGTTGCAGTTCACTTGGATTGCTATCGTTGTGTGAAGGAATCTACTGGTCCATGGC ATTGTGAATTATGTGAAGAATCATTGTCATCTAGATGCTCTGGAGCTCCTGTCAATTTTTGGGACAGGGCAAATGGTGTTGAATGTGGTTTATGTGGTGG TATTAAAGGTGCTTTCAGGAAATCTACTGATGGTAGATGGGTTCATGCCTTTTGTGCAGAGTGGGTCTTTGAACCAACATTCAGAAGGGGACAAGTAAAT CCTGTTGAAGGAATGGAAAAGATTGCCAAGGAGATTAACATTTGTTGTGTCTGCTGCCATAGACATGGTGTCTGTGTAAAATGTAGTGCTGGTCACTGTC AGGCCACATTTCATCCCACCTGTGCTAGGAGTGCAGGTTTTTACATGAATGTTAAGACTCTTAATGGCAAGATGCAGCACAAGGCTTACTGTGAAAAGCA TAGCTTGGAGCAGAAGGCAAAGGCTGAAACTCAAAAACATGGAGAAGAAGAGATAAAGAGCATGAGGCAAGTCAGGGGTCAATTGGAGAGATTACGTCTT CTTTGTGAGAGAATTGTTAGACGTGAAAAAATAAAGCGGGAGTTGGTTTTATGCTCACACAGCATACTTGCTTGCAAGCGAGACCAAGTTGCTCGTTCAG TACTTGTTCGGAGTCCCCCTTTCCCTACAGATGTCAGTTCAGAATCAGCTACAACATCCCTCATTGGGAACACAGATGGGTACAAGTCATGCAGCGATGC TGTCCAAAGATCAGATGATGTTACAGTAGACAGCACCATTTCTGTCAAGCACCGAGTTAAGGTTGCTTTGACCATGGACACTGACCAAAAGACCGATGAC AGCTCCACATCTCAAAACCTTTTTACTCCAAAACCTTCAGAGAGGATGCCTTTTGCTGGGAAGCAAATACCTCAAAGACCTTCCTCCGCATCACATAATC TTTTGGATGAAGGAGAATGGAGCTCAAAATCAAAGCATTATGAGACTTTTGAGAAAGAGCTGGTAATGACTTCGGATGAAGCATCGATGAAGAACCAGAA GTTACCTAAAGGATATTTTTATATTCCTGTGGATTGCCTTCCAAAGGAGAAGCGGAACAATCAGAATGCATGTTCTGGTGAGCCCTTGGAACATAATGGT TAG
AA sequence Show only first row Show all	>Potri.002G089400.2 pacid=42776951 polypeptide=Potri.002G089400.2.p locus=Potri.002G089400 ID=Potri.002G089400.2.v4.1 annot-version=v4.1 MTGGRCHRRKKMMGRGPDGGCGADERPCRSVSRVPAANSLANEPEIPQPTVKKPTSLEVDFFSQANKVLSVHSPFDVAENASGSGVPSFPILSTLPSRLA SLLRQSDGSRKKHKRSHSGVDKKSSSRVSDRSKGGNIWVETEEFFRGLTLPDIDALFELSSLFNSLGYTKCFYIPYIGNEKIERIETTATNVKTEENLNG KAEGNNTNEQSDTSANVENANDNVEMDCVDGNGKKLIVKDEGSQEDGQFMEIDSVATQSDGAECLTQEEANGCSVSDFSSSVEWLLGCRNRNILTSERPS MKRKLLGSDAGLEKVLVGRPCEGNLSLCDFCCKGETGNVSNRLIVCSSCKVAVHLKCYGVQGDVNKFWLCSWCKQKSDDNDLVKQSCVLCPKEGGALKPV NVENGGSVLEFVHLFCSQWTPEVYIEDLTKMEPVMNVGGIKETRRKLVCNVCKVKSGTCVRCSHGTCRTSFHPICAREARHRMEVWGKYGSNNVELRAFC SKHSELPDDKDTHQLGEAFVAASHNCSVASHDPSELQMDKQHKLNSGRNGDKLAVHIETSDTNSGKPGDGESWEIELNDLKSDAVPLSESGDVDQLIDTG IFERGGYGDASPSDFQNLLLILKKLIDQGKVNAEELTTEIGISPDSLIPTLAEVNLVPDFQAKLVRWFQNHVHLASRHKNLKVQLKSTIFPKAEIGTADH SDGITVSESDITDAVAVKSVPPGRRTKSNIRILRDNSVICSPEEILSANGIIMNGIKAVDQLGSEEPENFREVSIPNVAEKIPDVLQDSSVLHLPKSEDG SLSVKIEQVHAAIPDKSNSINTDGAVSVFSDVNFVIPNLIEPEAYSNSYVHPCIHEKLSQIQSGMLLQKGISELEGSKDGEISRLEASSNASVCCNHRHK HSKCNDLICSSSEVNPEQLAKAKKLGILKLSPVDEVEGEIIYFQNRLLGNAVARKHFTDNLISKVARHLPQEIDASRGQRWDEVLVNRYLCDVREAKKQG RKERRHKEAQAVLAAATAAAAASSRTSSFRKDALDESAHQEKYNTSNGRAGISSQLMPRPKEMLSRVAVPRISSEKYSDFVQSISDFSKDHPGPCDICRR FETILNPILVCSGCKVAVHLDCYRCVKESTGPWHCELCEESLSSRCSGAPVNFWDRANGVECGLCGGIKGAFRKSTDGRWVHAFCAEWVFEPTFRRGQVN PVEGMEKIAKEINICCVCCHRHGVCVKCSAGHCQATFHPTCARSAGFYMNVKTLNGKMQHKAYCEKHSLEQKAKAETQKHGEEEIKSMRQVRGQLERLRL LCERIVRREKIKRELVLCSHSILACKRDQVARSVLVRSPPFPTDVSSESATTSLIGNTDGYKSCSDAVQRSDDVTVDSTISVKHRVKVALTMDTDQKTDD SSTSQNLFTPKPSERMPFAGKQIPQRPSSASHNLLDEGEWSSKSKHYETFEKELVMTSDEASMKNQKLPKGYFYIPVDCLPKEKRNNQNACSGEPLEHNG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77800			PHD finger family protein (.1....		Potri.002G089400 [exp]	0	1
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.007G003400 [exp]	2.00	0.9191	HAC901,Pt-HAC1.4
AT5G22450			unknown protein		Potri.010G238400 [exp]	2.82	0.9186
AT1G24300			GYF domain-containing protein ...		Potri.001G326500 [exp]	2.82	0.9149
AT3G06670			binding (.1.2)		Potri.010G142200 [exp]	3.16	0.9092
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Potri.007G071600 [exp]	4.58	0.9037
AT5G27460			Tetratricopeptide repeat (TPR)...		Potri.005G160100 [exp]	5.47	0.8857
AT4G39160	MYB		Homeodomain-like superfamily p...		Potri.010G019600 [exp]	7.34	0.8942
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Potri.005G092700 [exp]	8.12	0.9038
AT3G63070			Tudor/PWWP/MBT domain-containi...		Potri.014G138700 [exp]	8.36	0.8857
AT5G15540		EMB2773, ATSCC2	EMBRYO DEFECTIVE 2773, ARABIDO...		Potri.017G092600 [exp]	8.48	0.8877

Compare expression of checked genes

Potri.002G089400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.