Plant FIBer expression Database

Potri.002G089500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G64610 748 / 0 HAM1 histone acetyltransferase of the MYST family 1 (.1)
AT5G09740 739 / 0 C2H2ZnF HAM2 histone acetyltransferase of the MYST family 2 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G171700
[exp]
850 / 0 AT5G64610 751 / 0.0 histone acetyltransferase of the MYST family 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012707
[exp]
780 / 0 AT5G64610 779 / 0.0 histone acetyltransferase of the MYST family 1 (.1)
Lus10001302
[exp]
776 / 0 AT5G64610 775 / 0.0 histone acetyltransferase of the MYST family 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0257 Acetyltrans PF01853 MOZ_SAS MOZ/SAS family
CL0049 Tudor PF11717 Tudor-knot RNA binding activity-knot of a chromodomain
Representative CDS sequence
>Potri.002G089500.1 pacid=42778919 polypeptide=Potri.002G089500.1.p locus=Potri.002G089500 ID=Potri.002G089500.1.v4.1 annot-version=v4.1
ATGGGTTCGATCGACACCCCAAAAAATCCCGAGAACGGCGCCAGAACTCTGCCTCCCGCAACCGACGCCTACGCTACGTACGAAGGCGATAAAAACGGAA
TGCCTTCACGCGCCACCGAAATGACGCTTCCGGTCGAATCCGAAGCCATTAAGAAGAGGAAAGCGAGCATGTTACCGCTCGAGGTAGGTACTCGCGTTAT
GTGTCGTTGGAGAGACAGCAAGTACCATCCGGTTAAGGTCATCGAGCGCCGTAAGATGCAGTCTGTTGGGTCCATTGATTACGAGTACTACGTGCATTAT
ACAGAGTTCAATAGGAGGCTCGATGAATGGGTGAAGCTTGAACAACTAGATCTTGATTCAGTAGAGACAGTTGTCGATGAAAAAGTGGAGGACAAGGTAA
CAAGCTTGAAAATGACACGCCACCAGAAACGGAAGATTGATGAGACGCATGTGGAGGGCCATGAGGAGCTTGATGCTGCCAGCTTACGCGAGCATGAGGA
ATTCACAAAAGTAAAAAATATAGCCACCATTGAGCTTGGAAGATATGAGATTGAGACATGGTACTTCTCGCCTTTCCCACCGGAATACAATGATTGTTTG
AAGCTTTACTTTTGTGAATTTTGCCTCAACTTCATGAAGCGTAAAGAACAGCTTCAAAGGCATATGAAGAAGTGTGATCTCAAGCACCCTCCTGGTGATG
AAATTTATCGAAGTGGCACATTGTCAATGTTTGAGATAGATGGCAAAAAGAACAAGGTTTATGGGCAGAATCTTTGTTATTTGGCGAAGTTGTTTCTTGA
TCACAAGACCCTTTATTATGATGTTGACCTGTTTCTATTTTACATTTTGTGTGAATGTGATGATCGAGGATGCCACATGGTTGGATATTTTTCCAAGGAA
AAGCATTCTGAGGAGTCGTATAATTTGGCATGCATCCTCACTCTTCCTCCTTATCAAAGGAAAGGCTATGGGAAGTTTTTAATTGCCTTCTCATATGAAC
TTTCCAAGAAAGAAGGTAAAGTTGGCACACCTGAAAGACCCCTTTCAGACCTGGGGTTGTTGAGCTATAGAGGATATTGGACCCGAGTTCTTTTAGATAT
CTTGAAAAGGCACAAGGGAAATATTTCTATTAAGGAGCTTAGTGACATGACAGCAATAAAGGCAGAGGATATTTTGACTACCCTTCAGAGCCTAGAATTA
ATTCAGTACAGGAAAGGGCAGCATGTAATATGTGCAGATCCGAAGGTCCTGGATCGCCATCTAAAAGCTGCTGGAAGGGGTGGTCTTGAGGTTGATGTTA
GCAAATTGATCTGGACTCCTTACAAAGAACAAGGTTGA
AA sequence
>Potri.002G089500.1 pacid=42778919 polypeptide=Potri.002G089500.1.p locus=Potri.002G089500 ID=Potri.002G089500.1.v4.1 annot-version=v4.1
MGSIDTPKNPENGARTLPPATDAYATYEGDKNGMPSRATEMTLPVESEAIKKRKASMLPLEVGTRVMCRWRDSKYHPVKVIERRKMQSVGSIDYEYYVHY
TEFNRRLDEWVKLEQLDLDSVETVVDEKVEDKVTSLKMTRHQKRKIDETHVEGHEELDAASLREHEEFTKVKNIATIELGRYEIETWYFSPFPPEYNDCL
KLYFCEFCLNFMKRKEQLQRHMKKCDLKHPPGDEIYRSGTLSMFEIDGKKNKVYGQNLCYLAKLFLDHKTLYYDVDLFLFYILCECDDRGCHMVGYFSKE
KHSEESYNLACILTLPPYQRKGYGKFLIAFSYELSKKEGKVGTPERPLSDLGLLSYRGYWTRVLLDILKRHKGNISIKELSDMTAIKAEDILTTLQSLEL
IQYRKGQHVICADPKVLDRHLKAAGRGGLEVDVSKLIWTPYKEQG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G64610 HAM1 histone acetyltransferase of t... Potri.002G089500
[exp]
0 1
AT5G13240 transcription regulators (.1) Potri.010G115800
[exp]
1.00 0.8701
AT4G03200 catalytics (.1.2) Potri.002G209900
[exp]
12.24 0.8142
AT1G58470 XF41, ATRBP1 RNA-binding protein 1 (.1) Potri.002G115000
[exp]
13.49 0.8373
AT2G37975 Yos1-like protein (.1) Potri.016G109500
[exp]
16.49 0.8162
AT5G23710 DNA binding;DNA-directed RNA p... Potri.018G000800
[exp]
18.49 0.8264
AT1G11360 Adenine nucleotide alpha hydro... Potri.011G039800
[exp]
21.90 0.7763
AT4G26980 RNI-like superfamily protein (... Potri.011G090700
[exp]
22.04 0.8041
AT4G39150 DNAJ heat shock N-terminal dom... Potri.004G158300
[exp]
24.00 0.7924
AT5G61500 ATATG3 autophagy 3 (APG3) (.1) Potri.001G126500
[exp]
24.24 0.8030
AT5G64610 HAM1 histone acetyltransferase of t... Potri.005G171700
[exp]
25.45 0.7936

Potri.002G089500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.