Plant FIBer expression Database

Potri.002G089650 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G36940 97 / 4e-25 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G171600
[exp]
248 / 1e-84 AT1G36940 106 / 4e-29 unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.002G089650.1 pacid=42777842 polypeptide=Potri.002G089650.1.p locus=Potri.002G089650 ID=Potri.002G089650.1.v4.1 annot-version=v4.1
ATGGGTAACGGATACAACCACCATCTCCATCACCAAAACATTCACCCCCAACACAAGAGCACATTCTTGCCTATGTTATGTTCAAGACCAACCATCAAAG
ATGTGACTCTTCCAAAATGGGAAGACCGATCCATGTCCATCTCTAGTTCTGACCCTTTATCTCCAAAGATCGGTTGCATGGGGCAGGTCAAGAGAAACAA
CAAGATAGTTGGCTTCCCCACTTCTAACAAGTTCACAGTCACCACCAAGAATTACAACGGTGCTAATGTCAAGTACTCCAGGCTCAAGAGGATCTTCTCT
GGCAAGAATATTCTTACTAGCGCCACCGTCTCAATAGCAACTAGTACTGCTCATAGAAGAAGAGAGGTGATGATGAATGGTGCTAATGGGGCCAAGATTG
ATGATACTAAAGAGAATTCTGTTTCAGTTAGCATAGAGAATATGGATCCTCCTTTGCCTGTAGTTAAGAGAGTTCAACAACCAACAGAAGATGGAGAAGC
GAACAGTCTTTGGAAGAGGAGATCTGGTGGGTTAGCATTGAAGAATTTGCAGCTGCAAGAGATCCAACTTAATAGAAGTAGTCTTGCACCAACCACTGTT
TGA
AA sequence
>Potri.002G089650.1 pacid=42777842 polypeptide=Potri.002G089650.1.p locus=Potri.002G089650 ID=Potri.002G089650.1.v4.1 annot-version=v4.1
MGNGYNHHLHHQNIHPQHKSTFLPMLCSRPTIKDVTLPKWEDRSMSISSSDPLSPKIGCMGQVKRNNKIVGFPTSNKFTVTTKNYNGANVKYSRLKRIFS
GKNILTSATVSIATSTAHRRREVMMNGANGAKIDDTKENSVSVSIENMDPPLPVVKRVQQPTEDGEANSLWKRRSGGLALKNLQLQEIQLNRSSLAPTTV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G36940 unknown protein Potri.002G089650
[exp]
0 1
AT1G30040 ATGA2OX2 GIBBERELLIN 2-OXIDASE 2, gibbe... Potri.004G065000
[exp]
6.85 0.9365 GA2.9,GA2ox3
AT1G66910 Protein kinase superfamily pro... Potri.015G018101
[exp]
8.71 0.9580
AT2G46150 Late embryogenesis abundant (L... Potri.001G098100
[exp]
15.96 0.9537
AT1G66920 Protein kinase superfamily pro... Potri.012G003500
[exp]
17.77 0.9534
AT1G70250 receptor serine/threonine kina... Potri.012G003450
[exp]
19.62 0.9519
AT1G07390 AtRLP1 receptor like protein 1 (.1.2.... Potri.018G124400
[exp]
28.53 0.9509
AT1G68040 S-adenosyl-L-methionine-depend... Potri.019G016102
[exp]
30.16 0.9513
AT4G39830 Cupredoxin superfamily protein... Potri.005G079400
[exp]
30.49 0.9510 Pt-AO1.3
AT3G02645 Plant protein of unknown funct... Potri.001G337900
[exp]
31.17 0.9505
AT5G48380 BIR1 BAK1-interacting receptor-like... Potri.017G003800
[exp]
31.24 0.9513

Potri.002G089650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.