Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77850 520 / 2e-179 ARF ARF17 auxin response factor 17 (.1) AT4G30080 375 / 6e-122 ARF ARF16 auxin response factor 16 (.1) AT2G28350 363 / 4e-117 ARF ARF10 auxin response factor 10 (.1) AT5G37020 231 / 2e-66 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) AT1G19220 233 / 1e-65 ARF IAA22, ARF11, ARF19 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) AT2G33860 224 / 3e-65 ARF ARF3, ETT ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT1G19850 229 / 6e-65 ARF IAA24, ARF5, MP MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT1G30330 229 / 7e-65 ARF ARF6 auxin response factor 6 (.1.2) AT4G23980 219 / 4e-63 ARF ARF9 auxin response factor 9 (.1.2) AT1G59750 216 / 6e-62 ARF ARF1 auxin response factor 1 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G171300 [exp] 999 / 0 AT1G77850 534 / 0.0 auxin response factor 17 (.1) Potri.010G223200 [exp] 381 / 7e-124 AT4G30080 777 / 0.0 auxin response factor 16 (.1) Potri.004G211700 [exp] 377 / 2e-122 AT2G28350 777 / 0.0 auxin response factor 10 (.1) Potri.016G090300 [exp] 376 / 6e-122 AT4G30080 687 / 0.0 auxin response factor 16 (.1) Potri.008G039000 [exp] 374 / 4e-121 AT4G30080 749 / 0.0 auxin response factor 16 (.1) Potri.006G127500 [exp] 372 / 3e-120 AT4G30080 677 / 0.0 auxin response factor 16 (.1) Potri.009G014800 [exp] 370 / 1e-119 AT2G28350 706 / 0.0 auxin response factor 10 (.1) Potri.005G236700 [exp] 234 / 8e-67 AT1G19850 1060 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Potri.002G024700 [exp] 231 / 1e-65 AT1G19850 1032 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024753 [exp] 669 / 0 AT1G77850 494 / 2e-169 auxin response factor 17 (.1) Lus10024754 [exp] 664 / 0 AT1G77850 505 / 1e-173 auxin response factor 17 (.1) Lus10009770 [exp] 650 / 0 AT1G77850 496 / 4e-170 auxin response factor 17 (.1) Lus10026510 [exp] 388 / 8e-127 AT4G30080 694 / 0.0 auxin response factor 16 (.1) Lus10023519 [exp] 379 / 2e-124 AT4G30080 622 / 0.0 auxin response factor 16 (.1) Lus10040403 [exp] 379 / 9e-124 AT4G30080 625 / 0.0 auxin response factor 16 (.1) Lus10019940 [exp] 364 / 7e-118 AT4G30080 660 / 0.0 auxin response factor 16 (.1) Lus10021467 [exp] 354 / 6e-114 AT4G30080 588 / 0.0 auxin response factor 16 (.1) Lus10016091 [exp] 241 / 4e-75 AT4G30080 315 / 7e-103 auxin response factor 16 (.1) Lus10010969 [exp] 222 / 5e-63 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain CL0405 [poplar] [flax] PF06507 [poplar] [flax] Auxin_resp Auxin response factor
Representative CDS sequence Show only first row Show all	>Potri.002G089900.1 pacid=42779118 polypeptide=Potri.002G089900.1.p locus=Potri.002G089900 ID=Potri.002G089900.1.v4.1 annot-version=v4.1 ATGCCGCAGCCGCAACTGACTGAGCTCAGTCGCGTCGACCCGCGGTTCTGGCGAGCCTGTGCAGGATCCTCCGTTCAAATTCCCGCCGTTAACTCTAGGG TTTACTACTTCCCTCAAGGTCATTTCGAACAATCCTCATCGTCCACGGCACCTCATCCTCCATTCCTCACCAATCTCGCTCTCTCTAAACCCTCAATCCC TTGTCAAATCTCCGCCGTTGATTTCCTCGCTGATCCAGTAACTGACGAGGTCTTCACCAGACTTCTCCTTATCCCTCTCGATAACCCCTTCTCTAACCTC CCTCTCTCCTTTCTAGAACCTTGTAGAAGTGAAGGTGAAGGTGCTAATGACGTTGATGACGACGAAAGAAAGATTTTGGCCTTCTCTAAGATTCTAACTC CATCAGATGCGAATAACGGTGGCGGCTTCTCTGTCCCGAGGTTCTGTGCCGACTCGATCTTCCCTCCGTTAAACTACCAGGCGGAGCCTCCGGTCCAGAC TCTAACGGTTGCCGATATTCACGGCGTTAGTTGGGATTTCAGGCACATTTATCGAGGTACGCCACGTAGGCACTTGCTAACTACCGGTTGGAGTAAGTTT GTTAACAATAAGAAGTTGATTGCGGGAGATTCGGTGGTTTTTATGAGGAATTTGAAGGGAGAGATGTTCATTGGAGTGAGGAGGGCTGTTAGGTTTAATA ACAGTGCCAGGTGGAGGGAGCAGGTTTCTGACAGCGGTGGAGATGGGAAAGTGAAGGTGGAGGAGGGGTTTTCAAGGAGTTGGAGAGGGCGGTTGTCTCA AGAGGCTGTGGTGGAGGCAGTAGAGAGGGCGGCTAAAGGCTTGCCGTTTGAGGTTGTCTACTATCCGAGGGCAGGGTGGTATTCAGATTTTGTGGTGAGG GCTGAAGTGGTGGAAGCTGCACTATGTGTGTTTTGGACTGCTGGGATGAGAGTGAAGATGGCTGTGGAGACTGAGGATTCCTCCAGAATGACTTGGTTTC AGGGGACTGTTTCGGGTACTGGTTTGCCTGACTGTGGTGCATGGCGTGGCTCTCCTTGGCGCATGCTTCAGATTACTTGGGATGAGCCTGAAGTTCTGCA GAATGTAAAGAGAGTGAGCCCTTGGCAAGTGGAATTTGTTGCAACCACACTGCCAATTCAAGACGCATCCCCCCCAATGAAGAAATTGAGATATCCTAAT GATTCTGGGTTCCTGACAAATGGAGAACTTTTCTTTCCGATGTCAGACCTAACTAATTCAAGAACGGGGCACATGAATGCTTCAATGTTGAATTATAGTA CTTTTCCTGCTGGCATGCAGGGAGCCAGGCAAGATCCTTTTTCCACATTCAGTTTATCCAACTTAATAAGTGAAAATGCTTCTCAGGTGTTTGGTGACAA GGTCTTTGGAAACAACTTGGTACCCAAAATGAAAAGAATGCCCAGTGAGATGAACATTGGCAGTTTGCAGTCTGGGGACTTATCACCTGAGAGCCAGAGT AGTGCACATTCTTTTGGCAAAGACTTTACTGGAAACAGGAGCTTCAACCCCAAAAAGGTTGGAATTAGCTCTATTCAGTTATTTGGTAAGATCATTCACA TGAATCAGCCGGTTGAAAATGGTTTTGATAGTGTTGGCTTCATGGACAACAGCAGTAAAGGTTGCAATGAAACTGAGGGTGTTAATGCACTTGAACTTTC ACTGACTTCCTCCTATACAGAACTACTTAACAGGATTGATGTCCAATGCCAAAGCGCTTCGGCTGTTGAGGCATGTTCTGCATGA
AA sequence Show only first row Show all	>Potri.002G089900.1 pacid=42779118 polypeptide=Potri.002G089900.1.p locus=Potri.002G089900 ID=Potri.002G089900.1.v4.1 annot-version=v4.1 MPQPQLTELSRVDPRFWRACAGSSVQIPAVNSRVYYFPQGHFEQSSSSTAPHPPFLTNLALSKPSIPCQISAVDFLADPVTDEVFTRLLLIPLDNPFSNL PLSFLEPCRSEGEGANDVDDDERKILAFSKILTPSDANNGGGFSVPRFCADSIFPPLNYQAEPPVQTLTVADIHGVSWDFRHIYRGTPRRHLLTTGWSKF VNNKKLIAGDSVVFMRNLKGEMFIGVRRAVRFNNSARWREQVSDSGGDGKVKVEEGFSRSWRGRLSQEAVVEAVERAAKGLPFEVVYYPRAGWYSDFVVR AEVVEAALCVFWTAGMRVKMAVETEDSSRMTWFQGTVSGTGLPDCGAWRGSPWRMLQITWDEPEVLQNVKRVSPWQVEFVATTLPIQDASPPMKKLRYPN DSGFLTNGELFFPMSDLTNSRTGHMNASMLNYSTFPAGMQGARQDPFSTFSLSNLISENASQVFGDKVFGNNLVPKMKRMPSEMNIGSLQSGDLSPESQS SAHSFGKDFTGNRSFNPKKVGISSIQLFGKIIHMNQPVENGFDSVGFMDNSSKGCNETEGVNALELSLTSSYTELLNRIDVQCQSASAVEACSA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77850	ARF	ARF17	auxin response factor 17 (.1)		Potri.002G089900 [exp]	0	1
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Potri.004G062300 [exp]	1.41	0.9003
AT5G20070		ATNUDX19, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.006G154200 [exp]	3.16	0.8770
AT5G66360		DIM1B	adenosine dimethyl transferase...		Potri.018G018900 [exp]	3.87	0.8853
AT5G10030	bZIP	OBF4, TGA4	OCS ELEMENT BINDING FACTOR 4, ...		Potri.007G079900 [exp]	4.24	0.8907	STGA1.2
AT1G24267			Protein of unknown function (D...		Potri.001G058700 [exp]	4.58	0.8361
AT4G35910			Adenine nucleotide alpha hydro...		Potri.006G051300 [exp]	4.89	0.8611
					Potri.014G049100 [exp]	5.29	0.8840
AT3G06560		PAPS3	poly(A) polymerase 3 (.1)		Potri.008G102500 [exp]	6.00	0.8505
AT1G77850	ARF	ARF17	auxin response factor 17 (.1)		Potri.005G171300 [exp]	8.24	0.8388
AT4G12760			unknown protein		Potri.014G197700 [exp]	8.48	0.8567

Compare expression of checked genes

Potri.002G089900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.