Plant FIBer expression Database

Potri.002G090100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G36380 69 / 1e-16 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G171000
[exp]
139 / 3e-44 AT1G36380 62 / 9e-14 unknown protein
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF15938 DUF4750 Domain of unknown function (DUF4750)
Representative CDS sequence
>Potri.002G090100.1 pacid=42779705 polypeptide=Potri.002G090100.1.p locus=Potri.002G090100 ID=Potri.002G090100.1.v4.1 annot-version=v4.1
ATGGAGTCCTCCTCCTCCCTCTCTCATTGGGATTATTTGGGTTTGTTAATTTTGCGACCTGTTCTCGCTATCTTGTTTGTGTTTTCGTTTATATCTATTG
GTTGGTTTTTGGCATGGATGCTAGTGCTGGTACATGTGCCTTTGGTTCAAGAGATTTTCGGCCCGCGTAAAAATCCCACCAAGCCTAAGCCACTGACCCT
TCGAATATCAAGAATTTATGATACCATTGATCCCCGATATTTCACTCCTGCTGGGATTAACAGCTCTAGATCAGCAGCAGATTGA
AA sequence
>Potri.002G090100.1 pacid=42779705 polypeptide=Potri.002G090100.1.p locus=Potri.002G090100 ID=Potri.002G090100.1.v4.1 annot-version=v4.1
MESSSSLSHWDYLGLLILRPVLAILFVFSFISIGWFLAWMLVLVHVPLVQEIFGPRKNPTKPKPLTLRISRIYDTIDPRYFTPAGINSSRSAAD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G36380 unknown protein Potri.002G090100
[exp]
0 1
AT3G55920 Cyclophilin-like peptidyl-prol... Potri.010G189000
[exp]
1.73 0.8521
Potri.019G120400
[exp]
3.31 0.8356
AT5G20090 Uncharacterised protein family... Potri.015G092500
[exp]
3.46 0.8347
AT4G15563 unknown protein Potri.008G204800
[exp]
4.24 0.8561
AT4G28830 S-adenosyl-L-methionine-depend... Potri.018G083800
[exp]
5.47 0.8327
AT1G52740 HTA9 histone H2A protein 9 (.1) Potri.018G032100
[exp]
7.41 0.7985
AT3G48330 ATPIMT1, PIMT1 Arabidopsis thaliana protein-l... Potri.012G090300
[exp]
13.41 0.8101
Potri.017G149301
[exp]
13.56 0.8426
AT5G38260 Protein kinase superfamily pro... Potri.007G125200
[exp]
13.78 0.8461
Potri.010G181700
[exp]
20.00 0.8359

Potri.002G090100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.