Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22030 360 / 2e-124 unknown protein AT1G77855 337 / 8e-116 unknown protein AT1G01550 42 / 0.0004 BPS1 BYPASS 1, Protein of unknown function (DUF793) (.1), Protein of unknown function (DUF793) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G170700 [exp] 621 / 0 AT1G22030 358 / 9e-124 unknown protein Potri.001G211900 [exp] 381 / 7e-133 AT1G22030 291 / 2e-97 unknown protein Potri.003G018700 [exp] 362 / 2e-125 AT1G22030 266 / 2e-87 unknown protein Potri.019G084400 [exp] 52 / 2e-07 AT1G77855 47 / 5e-06 unknown protein Potri.013G113800 [exp] 47 / 1e-05 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019943 [exp] 272 / 8e-90 AT1G22030 241 / 9e-78 unknown protein Lus10015473 [exp] 116 / 4e-31 AT1G22030 100 / 2e-25 unknown protein Lus10036385 [exp] 47 / 9e-06 AT2G46080 434 / 4e-153 unknown protein Lus10007920 [exp] 45 / 4e-05 AT2G46080 433 / 8e-153 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G090300.1 pacid=42778881 polypeptide=Potri.002G090300.1.p locus=Potri.002G090300 ID=Potri.002G090300.1.v4.1 annot-version=v4.1 ATGGATCCTTCCTCTACAAATTCTGTCAATGGTTTCTACTCTTTTCTAACCAGAGGGATCGATGATCTTGAACGTGTTTATCTCGCCAACAACTTCATGT CGATTCAATTCCTTCAAAGAGTTCTTTCTTTATTAAGATCTTTTCATTCTCAGTTGACTTTGCTTGTCCAAAAACTCCATTTGCCTGTTGGTGATAAGTG GCTTGATGAATACATGGACGAGAGTTCTAAGCTATGGGAGGCATGTCATGTCCTTAAATCAGGCGTATCTGGCATCGAGAATTACTATTCTGCTGGATTC AATATCACCTCTTCTCTTGACAATCATCGCCATCTTAGCCCCCAGCTCTCTCGCCAGGTCATAAGGGCAATTTCCGGGTGTAGAAGGGAAGCAGTGGGAT TAGAAGAAGATAACAGAGCTTTAATGGAAACAAGAATCCAACCGCTATCTTTGAGGTTTGATGAGAAGATTTCTATTGAATCCAAACTCAACGGATTCAA TGGTTTTCGAGGAGTTCTGTATGCAATGAGAAACGTAAGCTCTTTGCTACTAATGATCTTGCTCTATGGACTGGTCTATTGTTGGCCAGAATCAAGTTTT CTGCGAGGAGGGTACGAAGGGTGCTTGTTTTTTGGATCAGCTTTCATGATCTCAACAGGAAGATTGCAGCAGAGAGTAGCAGCAGAGATAAACCAGATAA ATGGGAGGCCAGGGATTCTGCTTTACGAGTTCAGGAGATCAAAGATGGCCATGGAGGAGCTCAGAGGGGAGCTTGAGAGAAAGTGTGGACAAGGAGGAGC TGTAGAGTGGGAAACAGAGGTGGGGATGAGAGAAAGAGTGGACAACTTAAGAGGGTGTTTTGGGGTGTTGAGATCTGGAGCTGAAAATATTATTGGGCAG CTTGATGATTTCTTTGATGAGATTGTTGAAGGAAGGAAGAAGCTTTTGGACTTTTGCAGTCATAGGTAG
AA sequence Show only first row Show all	>Potri.002G090300.1 pacid=42778881 polypeptide=Potri.002G090300.1.p locus=Potri.002G090300 ID=Potri.002G090300.1.v4.1 annot-version=v4.1 MDPSSTNSVNGFYSFLTRGIDDLERVYLANNFMSIQFLQRVLSLLRSFHSQLTLLVQKLHLPVGDKWLDEYMDESSKLWEACHVLKSGVSGIENYYSAGF NITSSLDNHRHLSPQLSRQVIRAISGCRREAVGLEEDNRALMETRIQPLSLRFDEKISIESKLNGFNGFRGVLYAMRNVSSLLLMILLYGLVYCWPESSF LRGGYEGCLFFGSAFMISTGRLQQRVAAEINQINGRPGILLYEFRRSKMAMEELRGELERKCGQGGAVEWETEVGMRERVDNLRGCFGVLRSGAENIIGQ LDDFFDEIVEGRKKLLDFCSHR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22030			unknown protein		Potri.002G090300 [exp]	0	1
AT1G33800			Protein of unknown function (D...		Potri.013G102200 [exp]	10.09	0.8551
AT1G02040	C2H2ZnF		C2H2-type zinc finger family p...		Potri.014G066200 [exp]	16.30	0.8195
AT1G76250			unknown protein		Potri.005G249600 [exp]	21.30	0.8534
AT1G47270	TUB	AtTLP6	tubby like protein 6 (.1.2)		Potri.002G034600 [exp]	21.63	0.8041
AT1G67510			Leucine-rich repeat protein ki...		Potri.008G176900 [exp]	23.74	0.8362
AT3G49260		IQD21	IQ-domain 21 (.1.2.3)		Potri.015G012500 [exp]	24.00	0.8388
AT4G20980			Eukaryotic translation initiat...		Potri.011G053500 [exp]	24.24	0.8064
AT3G26935			DHHC-type zinc finger family p...		Potri.001G325400 [exp]	29.39	0.7885
AT2G30700			unknown protein		Potri.007G133733 [exp]	35.88	0.8345
AT5G12480		CPK7	calmodulin-domain protein kina...		Potri.001G257100 [exp]	38.15	0.8283	Pt-CPK7.2,CPK14

Compare expression of checked genes

Potri.002G090300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.