Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	KOM.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77860 299 / 1e-98 KOM KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1) AT2G29050 260 / 3e-83 ATRBL1 RHOMBOID-like 1 (.1.2) AT1G63120 229 / 3e-72 ATRBL2 RHOMBOID-like 2 (.1) AT3G53780 229 / 4e-71 ATRBL4 RHOMBOID-like protein 4 (.1.2) AT5G07250 214 / 5e-66 ATRBL3 RHOMBOID-like protein 3 (.1.2) AT1G12750 212 / 2e-65 ATRBL6 RHOMBOID-like protein 6 (.1.2.3) AT1G52580 170 / 2e-49 ATRBL5 RHOMBOID-like protein 5 (.1) AT4G23070 166 / 7e-48 ATRBL7 RHOMBOID-like protein 7 (.1) AT1G25290 67 / 5e-12 ATRBL10 RHOMBOID-like protein 10 (.1.2) AT5G38510 58 / 6e-09 Rhomboid-related intramembrane serine protease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G031900 [exp] 268 / 2e-86 AT2G29050 434 / 7e-152 RHOMBOID-like 1 (.1.2) Potri.001G241300 [exp] 262 / 5e-84 AT2G29050 441 / 6e-155 RHOMBOID-like 1 (.1.2) Potri.006G086300 [exp] 253 / 2e-80 AT2G29050 422 / 6e-147 RHOMBOID-like 1 (.1.2) Potri.003G122900 [exp] 244 / 9e-78 AT1G63120 374 / 3e-130 RHOMBOID-like 2 (.1) Potri.015G142000 [exp] 238 / 3e-75 AT5G07250 294 / 2e-98 RHOMBOID-like protein 3 (.1.2) Potri.012G139600 [exp] 222 / 5e-69 AT5G07250 324 / 6e-110 RHOMBOID-like protein 3 (.1.2) Potri.001G108700 [exp] 213 / 1e-65 AT1G63120 332 / 8e-114 RHOMBOID-like 2 (.1) Potri.003G019500 [exp] 63 / 1e-10 AT1G25290 354 / 3e-122 RHOMBOID-like protein 10 (.1.2) Potri.017G112900 [exp] 51 / 9e-07 AT5G38510 364 / 3e-122 Rhomboid-related intramembrane serine protease family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003743 [exp] 417 / 4e-144 AT1G77860 333 / 1e-112 KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1) Lus10028036 [exp] 405 / 1e-139 AT1G77860 323 / 1e-108 KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1) Lus10023789 [exp] 253 / 3e-80 AT2G29050 488 / 3e-173 RHOMBOID-like 1 (.1.2) Lus10004965 [exp] 246 / 4e-78 AT2G29050 486 / 6e-173 RHOMBOID-like 1 (.1.2) Lus10003971 [exp] 241 / 2e-72 AT5G02270 530 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Lus10017840 [exp] 230 / 3e-72 AT1G63120 441 / 9e-157 RHOMBOID-like 2 (.1) Lus10024497 [exp] 229 / 4e-72 AT1G63120 450 / 2e-160 RHOMBOID-like 2 (.1) Lus10005464 [exp] 230 / 1e-71 AT2G29050 453 / 1e-159 RHOMBOID-like 1 (.1.2) Lus10027436 [exp] 199 / 2e-59 AT5G07250 392 / 1e-135 RHOMBOID-like protein 3 (.1.2) Lus10022969 [exp] 61 / 5e-10 AT1G25290 309 / 3e-104 RHOMBOID-like protein 10 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0207 [poplar] [flax] Rhomboid-like PF01694 [poplar] [flax] Rhomboid Rhomboid family
Representative CDS sequence Show only first row Show all	>Potri.002G090400.2 pacid=42779220 polypeptide=Potri.002G090400.2.p locus=Potri.002G090400 ID=Potri.002G090400.2.v4.1 annot-version=v4.1 ATGCTTCCCGCCAAACCCAACTGCCATAACGAAGTCTCTTTTAAACGCTTTCTTTCGGTTGGAACTCATAAAACCAAGAAAATCACTCAGTCTTGCTGTA GAAGAAAAATGGAAGAAAAAGAAGATGATACCAAGATCAGCATTGCAGACCCAATTCAAGATCATCAAGAAACCACATTCTCTTTCGATTTCCGAACAGA ATTTCTTCAAGATGAAAACAAGACCCCATTCTTTAAACCCCGTTCTCGTAGGAGAAGAAGAGACACCTGTGTCATTTTTGCATTCGTTATCATCCACTTG GTAGTCTTTCTTATCACAATGGCCGTCAATGATTGTGGCTATAACTCTCACGGCGACTGCGCCTTCAAGGCCTTGGGGAGAATGTCGTTTCAGCCTCTTC TTGAAAACCCTTTTCTTGGTCCCTCTGCCTCCGCTCTGGATAAAATGGGGGCTATTCGCAAGACATTGTTGGCAGAACATCAAACTTGGCGTCTCTTTAT GTGCCCATTATTGCATGCTGGTGTCTTCCACTTTATGATCAACCTTCTCTGCATTATCTTTTTAGGAATTTACCTGGAGAAAGAGTTTGGATCAATAAGA ACTGGGATAATCTACATGCTGTCTGCCTTTTCTGGTACCTTGGTAACTGCAATTTTTGTCCGAGATAGTCCAGCAGTTTGTTCCTCCGGTGCTCTTTTTG GTTTACTAGGGGCTACAGTTTCTGCACTTACAAGGAATTGGAAATTCTACACCAATAAGGTTGCAGCTCTGCTGACGCTTTTCTTTGTGGCTGGATTCAA TTTAATGCTTGGCTTGCTACCTTACATGGACAACTATTCAAGCATTGGAAGTATGATATCAGGATTTCTACTTGGACTTGTGCTTTTTTACACCCCTAAA CTTAGGCAAGTGGCTCAAAACAAAATAGGTCTTTGTGAGTATGGCGTCAAAAGTTCATTTAACTGGAAGCAGAAGCTGGACAGGCCTGTGCTGAGGAGTG CTTCCCTGATCCTTTTCTCTCTTCTCTTTGTGGGACTTCTTGTGGCTGTACTCCTAGGCATCAATATAAGCCATTATTGCAGGTGGTGTAGATACATAGA CTGCATTCCTTACAAAAGGTGGAGTTGCAATGACCTAACGTCATCTTGTGAGACCATGGGAGGTGACAAAGAGTTGACGTTGACCTGCATGGGTAATGGG AACTTCAGAGTTTTCCCCTTCACCAACATTTCCCAAGAAAGGACACAGGATTTATGCACTCTGATATGCTCGTGA
AA sequence Show only first row Show all	>Potri.002G090400.2 pacid=42779220 polypeptide=Potri.002G090400.2.p locus=Potri.002G090400 ID=Potri.002G090400.2.v4.1 annot-version=v4.1 MLPAKPNCHNEVSFKRFLSVGTHKTKKITQSCCRRKMEEKEDDTKISIADPIQDHQETTFSFDFRTEFLQDENKTPFFKPRSRRRRRDTCVIFAFVIIHL VVFLITMAVNDCGYNSHGDCAFKALGRMSFQPLLENPFLGPSASALDKMGAIRKTLLAEHQTWRLFMCPLLHAGVFHFMINLLCIIFLGIYLEKEFGSIR TGIIYMLSAFSGTLVTAIFVRDSPAVCSSGALFGLLGATVSALTRNWKFYTNKVAALLTLFFVAGFNLMLGLLPYMDNYSSIGSMISGFLLGLVLFYTPK LRQVAQNKIGLCEYGVKSSFNWKQKLDRPVLRSASLILFSLLFVGLLVAVLLGINISHYCRWCRYIDCIPYKRWSCNDLTSSCETMGGDKELTLTCMGNG NFRVFPFTNISQERTQDLCTLICS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77860		KOM	KOMPEITO, Rhomboid-related int...		Potri.002G090400 [exp]	0	1	KOM.1
AT5G44740		POLH	Y-family DNA polymerase H (.1....		Potri.003G152600 [exp]	16.52	0.8601
AT1G26820		RNS3	ribonuclease 3 (.1)		Potri.010G168600 [exp]	16.97	0.8102	S.1
AT1G67950			RNA-binding (RRM/RBD/RNP motif...		Potri.010G103600 [exp]	18.43	0.8766
					Potri.008G069050 [exp]	21.67	0.8736
					Potri.019G014330 [exp]	26.05	0.8715
AT2G44740		CYCP4;1	cyclin p4;1 (.1)		Potri.015G112140 [exp]	37.46	0.8559
AT5G19760			Mitochondrial substrate carrie...		Potri.001G004366 [exp]	43.81	0.8581
AT4G10260			pfkB-like carbohydrate kinase ...		Potri.019G063600 [exp]	45.54	0.8569
					Potri.006G195500 [exp]	47.95	0.8510
					Potri.012G026150 [exp]	49.12	0.8539

Compare expression of checked genes

Potri.002G090400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.