Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12350 413 / 8e-146 ATCOAB 4-phospho-panto-thenoylcysteine synthetase (.1) AT5G02080 365 / 2e-127 DNA / pantothenate metabolism flavoprotein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G170600 [exp] 615 / 0 AT1G12350 363 / 3e-126 4-phospho-panto-thenoylcysteine synthetase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029374 [exp] 463 / 3e-165 AT1G12350 399 / 2e-140 4-phospho-panto-thenoylcysteine synthetase (.1) Lus10016172 [exp] 458 / 2e-163 AT1G12350 398 / 6e-140 4-phospho-panto-thenoylcysteine synthetase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF04127 [poplar] [flax] DFP DNA / pantothenate metabolism flavoprotein
Representative CDS sequence Show only first row Show all	>Potri.002G090500.1 pacid=42779112 polypeptide=Potri.002G090500.1.p locus=Potri.002G090500 ID=Potri.002G090500.1.v4.1 annot-version=v4.1 ATGGATTCTAGAAATGGATCAGTATCTGAAGCTCTATTGGATGCAGAAATCGAATCGTTTTTTGATTCGGCTCCTCCTCTAAAAGACAGAGCTGGGATTA TAAAGAAATTGAAGGAATTCATTGAATACAATTCTACTCCACCTGGAAAGGGGAGTCCTAGAAGGGTTGTGTGTGTGACATCTGGTGGCACCACAGTTCC ATTGGAGCAACGTTGCGTCCGTTACATTGATAATTTCAGCTCAGGCCATAGAGGAGCTACTTCTACTGAATATTTTATCAAGGCTGGGTATGCTGTTATC TTTTTATATAGGAGAGGAACTTTCCAGCCTTATTGCCAATCTCTTCCTGAGGATCCGTTACTTGAATGCTTTGAGTGCTCTGATGACTCTACTATTCAAG TGCGCCAACCACACACCGAAGCAGTGAAGAGAGCTGTTAGTGATCATCATGCTGCTATAGCTGGAGGTCACCTGTTAAAACTTTCATTTACAACCATATT TGAGTATCTTCAGATTTTACAAAGCATTGCAATGTCAATGAAGGATCTTGGGTCGCTTGCTGTGTTTTATCTTGCTGCTGCTGTATCTGACTTTTATGTT CCATGGAAGAGCATGGCAGAGCACAAGATTCAGTCAGCATCTGGTCCTTTGGACATGCGACTAGTGCAGGTCCCGAAAATGCTCTCAGCACTGAAGAAAG AATGGGCTCCCATGGCCTTCTGCATATCATTCAAGCTTGAGACAGATTCAAAGATTCTTTTGGAGAAAGCTGAAATGGCTCTTAAAAAGTACAGAATGCA TATGGTTGTTGCGAATGAGCTTTCGACTCGCAAAGAGGAAGTTACAGTTGTCACTGGTAATGAAAAGATTCTCGTGTGTCGTGACAAGACGCAGGCTGAT TCTGATGTGGAAGAACCCCTCATTGAATTAATTGTGGGCAGGCATTCAGCTTATGTTAAGGATTCTGATTTATGA
AA sequence Show only first row Show all	>Potri.002G090500.1 pacid=42779112 polypeptide=Potri.002G090500.1.p locus=Potri.002G090500 ID=Potri.002G090500.1.v4.1 annot-version=v4.1 MDSRNGSVSEALLDAEIESFFDSAPPLKDRAGIIKKLKEFIEYNSTPPGKGSPRRVVCVTSGGTTVPLEQRCVRYIDNFSSGHRGATSTEYFIKAGYAVI FLYRRGTFQPYCQSLPEDPLLECFECSDDSTIQVRQPHTEAVKRAVSDHHAAIAGGHLLKLSFTTIFEYLQILQSIAMSMKDLGSLAVFYLAAAVSDFYV PWKSMAEHKIQSASGPLDMRLVQVPKMLSALKKEWAPMAFCISFKLETDSKILLEKAEMALKKYRMHMVVANELSTRKEEVTVVTGNEKILVCRDKTQAD SDVEEPLIELIVGRHSAYVKDSDL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12350		ATCOAB	4-phospho-panto-thenoylcystein...		Potri.002G090500 [exp]	0	1
AT5G20520		WAV2	WAVY GROWTH 2, alpha/beta-Hydr...		Potri.006G145200 [exp]	4.24	0.6847
AT4G35860		ATGB2, AtRABB1b...	GTP-binding 2 (.1.2)		Potri.009G159600 [exp]	4.24	0.6893	Pt-ATGB2.1
AT5G40670			PQ-loop repeat family protein ...		Potri.017G070300 [exp]	17.94	0.6421
AT5G45360			F-box family protein (.1)		Potri.004G236200 [exp]	22.27	0.6370
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Potri.009G121400 [exp]	22.97	0.6199
AT1G74320			Protein kinase superfamily pro...		Potri.003G193000 [exp]	30.29	0.6298
AT1G65020			unknown protein		Potri.013G079101 [exp]	42.98	0.6510
AT5G05930		ATGC1	ARABIDOPSIS GUANYLYL CYCLASE 1...		Potri.008G062100 [exp]	44.98	0.5925
AT1G30540			Actin-like ATPase superfamily ...		Potri.001G466900 [exp]	48.49	0.6140
AT5G17010			Major facilitator superfamily ...		Potri.019G055600 [exp]	62.04	0.5979

Compare expression of checked genes

Potri.002G090500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.