Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77930 376 / 1e-132 Chaperone DnaJ-domain superfamily protein (.1.2) AT4G36040 64 / 3e-12 J11 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) AT5G59610 62 / 4e-11 Chaperone DnaJ-domain superfamily protein (.1.2) AT4G39960 60 / 5e-10 Molecular chaperone Hsp40/DnaJ family protein (.1) AT3G17830 59 / 1e-09 Molecular chaperone Hsp40/DnaJ family protein (.1) AT1G80030 58 / 2e-09 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT2G22360 56 / 7e-09 DNAJ heat shock family protein (.1) AT3G62600 56 / 8e-09 ATERDJ3B DNAJ heat shock family protein (.1) AT4G09350 55 / 1e-08 NdhT, CRRJ NADH dehydrogenase-like complex T, CHLORORESPIRATORY REDUCTION J, Chaperone DnaJ-domain superfamily protein (.1) AT2G17880 53 / 1e-08 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G172300 [exp] 61 / 2e-11 AT2G17880 115 / 2e-33 Chaperone DnaJ-domain superfamily protein (.1) Potri.015G035300 [exp] 64 / 3e-11 AT3G17830 504 / 4e-175 Molecular chaperone Hsp40/DnaJ family protein (.1) Potri.001G072700 [exp] 62 / 5e-11 AT5G59610 254 / 3e-84 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.005G073900 [exp] 61 / 1e-10 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.003G031800 [exp] 60 / 4e-10 AT1G80030 607 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Potri.007G094900 [exp] 59 / 8e-10 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.005G113100 [exp] 56 / 1e-09 AT2G17880 139 / 6e-43 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G198000 [exp] 57 / 3e-09 AT3G62600 551 / 0.0 DNAJ heat shock family protein (.1) Potri.009G131800 [exp] 54 / 3e-09 AT2G17880 109 / 9e-32 Chaperone DnaJ-domain superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001296 [exp] 360 / 5e-126 AT1G77930 370 / 2e-130 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10012702 [exp] 358 / 3e-125 AT1G77930 368 / 2e-129 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10000631 [exp] 61 / 2e-10 AT2G22360 672 / 0.0 DNAJ heat shock family protein (.1) Lus10023148 [exp] 61 / 4e-10 AT2G22360 675 / 0.0 DNAJ heat shock family protein (.1) Lus10023122 [exp] 59 / 1e-09 AT1G80030 636 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10031908 [exp] 59 / 1e-09 AT3G17830 457 / 3e-157 Molecular chaperone Hsp40/DnaJ family protein (.1) Lus10025060 [exp] 56 / 1e-09 AT4G36040 102 / 7e-29 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10040777 [exp] 58 / 2e-09 AT5G59610 246 / 6e-81 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10031336 [exp] 58 / 2e-09 AT3G17830 459 / 5e-158 Molecular chaperone Hsp40/DnaJ family protein (.1) Lus10017263 [exp] 56 / 2e-09 AT4G36040 106 / 2e-29 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Potri.002G090600.2 pacid=42778117 polypeptide=Potri.002G090600.2.p locus=Potri.002G090600 ID=Potri.002G090600.2.v4.1 annot-version=v4.1 ATGAGCAGCAGCAGCAGCAGCAGTTTGAGAACGGCATGTAGGCCTCACACAGTTTTAACGTCATTCACGTGCAGTAGCAGTAGCAGGCACCAACCTCGAT CCAGAATTAGGGTTTCCTTTCGAACCCCCCCTGATTGCAACAAGCGTCATTCCTCTTTCTTCTCTCCTTGGCTTATTCACACCAATAACAACGACCCCTG GTTCCGCGTTAATCACAAGAGAACTATAGTTCGTGCCTGGACCGAGCCTAAATCTCCATACGAAACCCTAGAATTGGAAAGGGATGCTGATGAAGAGGAT ATAAAGGTTGCTTATAGACGGTTGGCCAAATATTATCATCCAGATGTTTATGACGGAAGAGGCACTCTTGAGGAAGGAGAAACAGCTGAAGCTAGATTCA TCAAGATTCAAGCTGCATATGAGTTGCTAATGGATGATGAGAAGCGAAGACAATACAATATGGATAACAGAGTCAATCCAATGAAGGCCTCACAAGCATG GATGGAGTGGCTTATGAAAAAAAGAACAGCTTTTGATCAACGGGGTGATATGGCGATCATGGCTTGGGCTGAGCAACAGCAGCGTGAGATGAATCTCCGT GTGCGCCGTCTTTCTCGTACAAAGACTGACCCTGATGAAGAGAGACGGATTCTAGCAAAAGAGAAAAAGGCATCCATGGAATACTTTTCCAGCACAATGA AGCGTCACACACTTGTATTGAAGAAAAGGGATTTGATGCGAAAGAAAGCAGAGGAAAAAAAACGGTCCATTAGCCAGCTTTTAGCTGCAGAAGGGCTTGA GCTGGACACAGATGCTGATGAAACACTGTAG
AA sequence Show only first row Show all	>Potri.002G090600.2 pacid=42778117 polypeptide=Potri.002G090600.2.p locus=Potri.002G090600 ID=Potri.002G090600.2.v4.1 annot-version=v4.1 MSSSSSSSLRTACRPHTVLTSFTCSSSSRHQPRSRIRVSFRTPPDCNKRHSSFFSPWLIHTNNNDPWFRVNHKRTIVRAWTEPKSPYETLELERDADEED IKVAYRRLAKYYHPDVYDGRGTLEEGETAEARFIKIQAAYELLMDDEKRRQYNMDNRVNPMKASQAWMEWLMKKRTAFDQRGDMAIMAWAEQQQREMNLR VRRLSRTKTDPDEERRILAKEKKASMEYFSSTMKRHTLVLKKRDLMRKKAEEKKRSISQLLAAEGLELDTDADETL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77930			Chaperone DnaJ-domain superfam...		Potri.002G090600 [exp]	0	1
AT1G13990			unknown protein		Potri.010G164400 [exp]	1.00	0.9555
AT4G03230			S-locus lectin protein kinase ...		Potri.001G441040 [exp]	1.41	0.9539
					Potri.008G181801 [exp]	3.16	0.9310
AT3G44880		PAO, LLS1, ACD1	LETHAL LEAF-SPOT 1 HOMOLOG, AC...		Potri.004G217200 [exp]	3.46	0.9451
AT2G20890		PSB29, THF1	THYLAKOID FORMATION1, photosys...		Potri.013G148400 [exp]	4.89	0.9350
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Potri.003G119600 [exp]	5.00	0.9447
AT5G26940		DPD1	defective in pollen organelle ...		Potri.005G020600 [exp]	5.09	0.9282
AT4G37340		CYP81D3	"cytochrome P450, family 81, s...		Potri.002G121200 [exp]	5.74	0.9490	Pt-IFS1.43
AT1G20560		AAE1	acyl activating enzyme 1 (.1.2...		Potri.005G250700 [exp]	6.48	0.9349
AT4G05160			AMP-dependent synthetase and l...		Potri.004G102000 [exp]	7.21	0.9147	Ptr4CL8

Compare expression of checked genes

Potri.002G090600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.