Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56850 136 / 9e-38 bZIP DPBF3, AREB3 ABA-responsive element binding protein 3 (.1) AT2G41070 125 / 6e-34 bZIP DPBF4, ATBZIP12, EEL ENHANCED EM LEVEL, Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT1G49720 72 / 5e-14 bZIP ABF1 abscisic acid responsive element-binding factor 1 (.1.2) AT4G34000 70 / 3e-13 bZIP AtABF3, ABF3, DPBF5 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) AT3G19290 69 / 6e-13 bZIP AREB2, ABF4 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) AT1G45249 67 / 3e-12 bZIP AtABF2, ATAREB1, AREB1, ABF2 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) AT2G17770 62 / 4e-11 bZIP FDP, ATBZIP27 FD PARALOG, basic region/leucine zipper motif 27 (.1.2) AT4G35900 62 / 7e-11 bZIP ATBZIP14, FD-1, FD Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G36270 62 / 2e-10 bZIP EEL, GIA1, ABI5 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT1G03970 61 / 2e-10 bZIP GBF4 G-box binding factor 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G248100 [exp] 166 / 4e-49 AT3G56850 243 / 2e-79 ABA-responsive element binding protein 3 (.1) Potri.010G248300 [exp] 161 / 5e-47 AT3G56850 216 / 9e-69 ABA-responsive element binding protein 3 (.1) Potri.008G010800 [exp] 159 / 2e-46 AT3G56850 246 / 3e-80 ABA-responsive element binding protein 3 (.1) Potri.016G024000 [exp] 142 / 4e-40 AT3G56850 241 / 4e-79 ABA-responsive element binding protein 3 (.1) Potri.006G025800 [exp] 120 / 3e-32 AT3G56850 271 / 7e-91 ABA-responsive element binding protein 3 (.1) Potri.001G220700 [exp] 99 / 4e-24 AT3G56850 152 / 2e-44 ABA-responsive element binding protein 3 (.1) Potri.009G164500 [exp] 84 / 3e-18 AT3G44460 160 / 2e-46 basic leucine zipper transcription factor 67, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.009G018500 [exp] 74 / 7e-15 AT3G56850 160 / 1e-47 ABA-responsive element binding protein 3 (.1) Potri.009G101200 [exp] 72 / 6e-14 AT4G34000 358 / 2e-120 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028889 [exp] 174 / 4e-52 AT3G56850 273 / 7e-91 ABA-responsive element binding protein 3 (.1) Lus10008929 [exp] 143 / 2e-40 AT3G56850 214 / 3e-68 ABA-responsive element binding protein 3 (.1) Lus10008927 [exp] 114 / 5e-31 AT3G56850 139 / 1e-41 ABA-responsive element binding protein 3 (.1) Lus10008928 [exp] 82 / 1e-18 AT3G56850 137 / 4e-40 ABA-responsive element binding protein 3 (.1) Lus10028888 [exp] 86 / 2e-18 AT3G56850 157 / 1e-45 ABA-responsive element binding protein 3 (.1) Lus10014194 [exp] 82 / 4e-17 AT2G36270 342 / 2e-114 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10009755 [exp] 69 / 8e-13 AT1G45249 283 / 3e-91 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Lus10006489 [exp] 68 / 2e-12 AT1G45249 297 / 1e-97 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Lus10017049 [exp] 65 / 2e-11 AT2G36270 321 / 1e-106 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10021369 [exp] 64 / 2e-11 AT2G36270 322 / 2e-107 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [poplar] [flax] bZIP PF00170 [poplar] [flax] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Potri.002G090800.1 pacid=42777407 polypeptide=Potri.002G090800.1.p locus=Potri.002G090800 ID=Potri.002G090800.1.v4.1 annot-version=v4.1 ATGGATAATAATAGACCTTTGGTGCCATCAAATATTGGAGCCCAGGGGCCACAATTCCCATCTCTGCCTGGACAGGAGTCCTTGTACAATCTCACATTTG ATGAGGTGAATGATCAGATCGGAAATGTAAGGAAGCCTTTGAATGCTGTGAATGTTGATGAGCTAAGAAATGTGATATCCGTTGAAGAGAGTCAGCTGTT GCAAAATCCTCCTTCGTCTTCGTCTTCGTCTTCTTCCTCGTCCACTTTCCTCTTTCTTGGGAATTATAATCTTAACGGAACATCAAGTAGGAAAACTATC GATGATATGTGGAAGGAAATTGCCAACGAAGAACATGTAAACGTCTTCGATAACCAAATAGTTCGGCAACAACTTGGCGAAACTACACTTGAGGATTTTC TAGTTCGCGCGGGTGTAATCAACAAAGGAAATCAAAATGAAGTATTTAGTCATCAACCAATTATGGAGGTTGATCCAATGGTTGTGGGGTCACAGCAGAC AGATTTGTTACCATTTCAGATGGCTTCTGTGCAGCAGCAGCAGCAGCAACAGATGACATTGTTGGACTCAAATTTTCATATGTTTGAAGCTGTTTCTGAT CAGAACCCTGTTGTGGATGTTGGATACTCGGATAACCGACTGCCTATGCCTATGCCAGTGTCAGCAATGTCAGCAACATCTTCAGATTCTCGGGTGGCTG CTGAAAAGCAGTGTCGTTATACAGATGAGATGATGAAGAAGACTATTGAGAGGAGGCAGAATAGGATGATCAAGAATCGAGAGTCGGCAGCAAGGTCAAG AGCAAAGAAACAGGCTTATACCAGCCAGTTGGAGCATGCAGTGTTTCATTCAAGAAAAACAAATAACAGGCTCAAGAAGGAAAAGGAACTGGAGATCATA TTCTTATCGTCTGATCAAGCTCCCGTGCCACGATTCCAGCTACGGCGAACCAGCTCAGCTTCATTCTAG
AA sequence Show only first row Show all	>Potri.002G090800.1 pacid=42777407 polypeptide=Potri.002G090800.1.p locus=Potri.002G090800 ID=Potri.002G090800.1.v4.1 annot-version=v4.1 MDNNRPLVPSNIGAQGPQFPSLPGQESLYNLTFDEVNDQIGNVRKPLNAVNVDELRNVISVEESQLLQNPPSSSSSSSSSSTFLFLGNYNLNGTSSRKTI DDMWKEIANEEHVNVFDNQIVRQQLGETTLEDFLVRAGVINKGNQNEVFSHQPIMEVDPMVVGSQQTDLLPFQMASVQQQQQQQMTLLDSNFHMFEAVSD QNPVVDVGYSDNRLPMPMPVSAMSATSSDSRVAAEKQCRYTDEMMKKTIERRQNRMIKNRESAARSRAKKQAYTSQLEHAVFHSRKTNNRLKKEKELEII FLSSDQAPVPRFQLRRTSSASF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Potri.002G090800 [exp]	0	1
AT5G12060			Plant self-incompatibility pro...		Potri.006G170200 [exp]	21.54	0.5127
AT5G23260	MADS	ABS, TT16, AGL3...	TRANSPARENT TESTA16, AGAMOUS-l...		Potri.007G073000 [exp]	30.98	0.5025
AT5G06990			Protein of unknown function, D...		Potri.003G193700 [exp]	62.75	0.4446
AT5G02070			Protein kinase family protein ...		Potri.006G090200 [exp]	99.19	0.4691
AT4G27745			Yippee family putative zinc-bi...		Potri.003G145400 [exp]	101.29	0.4335
AT2G24670	B3		Domain of unknown function (DU...		Potri.013G065401 [exp]	104.69	0.4655
AT5G39280		ATEXP23, ATHEXP...	EXPANSIN 23, expansin A23 (.1)		Potri.017G092700 [exp]	128.90	0.4416	ATEXPA21.1,PtEXPA27
AT5G63390			O-fucosyltransferase family pr...		Potri.015G092600 [exp]	200.36	0.4357

Compare expression of checked genes

Potri.002G090800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.