Plant FIBer expression Database

Potri.002G090900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G08540 652 / 0 DNA-directed RNA polymerase II protein (.1)
AT1G77890 379 / 1e-127 DNA-directed RNA polymerase II protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004883
[exp]
730 / 0 AT4G08540 638 / 0.0 DNA-directed RNA polymerase II protein (.1)
Lus10020601
[exp]
719 / 0 AT4G08540 629 / 0.0 DNA-directed RNA polymerase II protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0551 BCLiA PF10186 Atg14 Vacuolar sorting 38 and autophagy-related subunit 14
Representative CDS sequence
>Potri.002G090900.6 pacid=42777408 polypeptide=Potri.002G090900.6.p locus=Potri.002G090900 ID=Potri.002G090900.6.v4.1 annot-version=v4.1
ATGAACAAAAAATCAAGTTGCTGTGCCATCTGTGAGAATTCGAATCGCGCCTCCATTTGTCCAATTTGTGTCAATTACAGATTGAATGAATATGGCACTT
TGTTGAAATCCTTGAATAGTCGCCGCGATTCCTTGTACTCCAAATTAAGTGTTGTGCTTATCGCAAAGGGGAAGGCAGATGATCAATTCAATTGGAGAGT
ACAACAAAATGAGAAGCTTGCAAGTTCGAGAGAGAAGCTACATCGTAATAAGGAACAACTTGCTCAAGGGAAGGCTAAGGTCGAGAAGCTGTCTCAAGAT
TTAAAGAAAAAAAATGGAATGCTTGAATCAGCTCGCAATGTGTTGGAAAAAAATCGTATGGAACAACTGGAGAAGTTCTATCCCAATCTTATTTGCACTC
AGAGTTTAGGGCATATGGCTATTACTTCTGAACTACTTCATAAGCAGTCTGTGGTCATAAAGCAGATATGTAAATTGTTCCCTCAACGCCGGGTGAATGT
AGATGGGGAGAGGAACTTTAGTGGTCAATATGATCAAATCTGTAATGCACGCTTACCAAGAGGACTCGATCCCCACTCTGTTTCATCTGAAGAGCTTGCT
GCCTCCTTGGGATACATGGTGCAGCTTCTAAATCTAGTGGCTCATAACTTGGCTGCCCCTACACTTCATAATGCAGGTTTTGCGGGCTCTTGCTCTCGAA
TTTGGCAGCGAGATTCTTATTGGAATGCATGTCCTTCTTCTAGAAGTAATGAATATCCCCTCTTTATACCTCGCCAGAATTATTGCTCTACTAGTTCTGA
AAATTCATGGACTGATAAAAGCTCGAGTAATTTTGGTGTTGCTTCAATGGAATCAGAGAGAAGGCCCCACCTAGATTCCACAAGAAGTAATAGCTTCAAT
TATTCATCCGTGTCTCCACATTCTGTTGAAACACACAAGGACTTGCAAAAGGGGGTTTCACTTCTCAAAAAAAGTGTGGCATGTGTAACAGCATATTGTT
ATAACTTGTTATGTTTAGATGTTCCTTCTGATACGTCTACCTTCGAAGCATTTGCAAAATTATTGTCCACACTATCTTCATCCAAGGAAGTTCGGTCTGT
ATTTAACTTGAAAATGGCCTGTTCAAGGTCATGCAAGCAAGTGCAAAAGTTGAACAAATCTGTGTGGAATGTAAATTCTGCCATCTCATCAAGTGCACTA
TTGGAGAGTGCACATGCATTGCAACTGATGAAAAACACTAGTGATAATAACCTTCCAAATTCGGCGGCAAGTTTTCTTTTTGCCACTGGGATATCTGATG
GGAAGAATGAGAGCTTTATCGATGGATGGGATCTGGTCGAACACCCCACCTTTCCTCCCCCGCCATCACAAGTTGAGGATATTGAGCATTGGACTCGAGC
CATGTTTATAGATGCCACAAAGAAATGA
AA sequence
>Potri.002G090900.6 pacid=42777408 polypeptide=Potri.002G090900.6.p locus=Potri.002G090900 ID=Potri.002G090900.6.v4.1 annot-version=v4.1
MNKKSSCCAICENSNRASICPICVNYRLNEYGTLLKSLNSRRDSLYSKLSVVLIAKGKADDQFNWRVQQNEKLASSREKLHRNKEQLAQGKAKVEKLSQD
LKKKNGMLESARNVLEKNRMEQLEKFYPNLICTQSLGHMAITSELLHKQSVVIKQICKLFPQRRVNVDGERNFSGQYDQICNARLPRGLDPHSVSSEELA
ASLGYMVQLLNLVAHNLAAPTLHNAGFAGSCSRIWQRDSYWNACPSSRSNEYPLFIPRQNYCSTSSENSWTDKSSSNFGVASMESERRPHLDSTRSNSFN
YSSVSPHSVETHKDLQKGVSLLKKSVACVTAYCYNLLCLDVPSDTSTFEAFAKLLSTLSSSKEVRSVFNLKMACSRSCKQVQKLNKSVWNVNSAISSSAL
LESAHALQLMKNTSDNNLPNSAASFLFATGISDGKNESFIDGWDLVEHPTFPPPPSQVEDIEHWTRAMFIDATKK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G08540 DNA-directed RNA polymerase II... Potri.002G090900
[exp]
0 1
AT4G32250 Protein kinase superfamily pro... Potri.018G026400
[exp]
6.16 0.8086
AT1G06290 ATACX3, ACX3 acyl-CoA oxidase 3 (.1) Potri.013G123500
[exp]
6.32 0.7723
AT1G72710 CKL2 casein kinase 1-like protein 2... Potri.003G043500
[exp]
8.36 0.7410
AT5G61760 ATIPK2BETA ARABIDOPSIS THALIANA INOSITOL ... Potri.012G111400
[exp]
15.42 0.7488
AT2G43400 ETFQO electron-transfer flavoprotein... Potri.017G027500
[exp]
21.07 0.7556
AT1G08230 ATGAT1 L-GAMMA-AMINOBUTYRIC ACID TRAN... Potri.008G026600
[exp]
27.76 0.7592
AT2G43010 bHLH SRL2, PIF4, AtP... phytochrome interacting factor... Potri.002G055400
[exp]
31.65 0.7492
AT1G11340 S-locus lectin protein kinase ... Potri.011G036100
[exp]
33.46 0.7480
AT2G47900 TUB AtTLP3 tubby like protein 3 (.1.2.3) Potri.008G195200
[exp]
40.24 0.7355
AT1G32230 ATP8, CEO1, RCD... RADICAL-INDUCED CELL DEATH1, A... Potri.003G096700
[exp]
44.27 0.6773 Pt-CEO1.1

Potri.002G090900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.