Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G36320 481 / 2e-169 unknown protein AT4G37920 297 / 6e-97 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G170400 [exp] 679 / 0 AT1G36320 469 / 2e-164 unknown protein Potri.007G000400 [exp] 297 / 4e-97 AT4G37920 551 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033109 [exp] 503 / 2e-177 AT1G36320 437 / 1e-151 unknown protein Lus10036666 [exp] 496 / 1e-174 AT1G36320 442 / 5e-154 unknown protein Lus10029560 [exp] 299 / 6e-98 AT4G37920 515 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G091000.1 pacid=42778129 polypeptide=Potri.002G091000.1.p locus=Potri.002G091000 ID=Potri.002G091000.1.v4.1 annot-version=v4.1 ATGGAGCTGGCTTGTGCTTCTGTGCAGGCTTCATGCTCTCTAACAATACCGGCTTCTTCAACCACCTCTCGACGTCGGTCGCCTTCTCTCTCCTTCTACA GATATTCATTTCCAAACCCTATCATCTCTTCTAAACTTAATAGTAATAAATTATCAGCTAATTCATTCAGGCGCCGAAATCCCTCTCTTGTTGCTGCTGT TGATGGCGCAACTACAGTACCCAGTGATTGTAATGGTGAGAAATTGTCGTTTTCTTATTCGTCTGAACCAACAGCTATCAATGATGACGGAAAAGATGGT GTTGATGATGGTAAAATGGCGAGTGTATGTAATAAATTAATTGAGGTTTTCATGGTCGACAAGCCAACTCCAAATGACTGGAGAAAGTTACTGGCTTTTA GTAAGGAATGGGACAATTTACGGCCTCATTTCTACAAGCGGTGTCAGGAACGAGCGGATTGTGAGGATGATCCTGGGAAGAAGCATAATTTACTTAGGTT TGCAAGGAAATTGAAAGAGATCGATGAAGATGTGCAAAGGCATAATGAACTTCTTGGGGTGATCAAGGCGGCACCATCCGAGTTGACTGAAATTGTTGCC AAGCGTCGTAAAGACTTCACTAAAGAATTTTTTGTGCATCTTTACACCGTAGCACAATCCTACCATGACAATCCAAGTGAGCAAAATGCCTTGGCAAAGC TTGGAAATGACTGTGTGGCTACTGTACAAGCTTATGATTGTGCAACAGAAAACATGGAAGCATTGAATGCTGCAGAGCTGAAGCTCCAAGACATCATCAA TTCTCCTTCCTTGGATGCAGCTTGCAAGAAGATAGATGATTTGGCTGAAAAAAATCAATTTGATTCAGCATTGGTCCTGATGATCACAAAAGCATGGTCA GCCGCTAAAGAGTCCAACATGACGAAAGATGAGGTCAAGGATATACTGTATCATCTGTACAAGACAGCTATAGGTAATCTTCAGAGGAATGTGCCTAAGG ACATTAGAATTCTAAAATATCTTCTTACAGTTGAGGATCCTGAAGAACGGTTGTGTGCCTTAAACGATGCATTTACCCCAGGAGAAGAACTTGAAGGGAA GGATGTGGACTCCCTATACACGACCCCTGAAAAACTACACACCTGGATCAAAGCTATGGTGGATGCTTACCATTTAAGTCAAGATGGCACACTCATGAGG GAGGCCAGAGATCTGATGAACCCAAAGATCATAAAAAAGATGGAGGAATTGAAGAAGTTAGTTGAAGACCATTTCATGTGA
AA sequence Show only first row Show all	>Potri.002G091000.1 pacid=42778129 polypeptide=Potri.002G091000.1.p locus=Potri.002G091000 ID=Potri.002G091000.1.v4.1 annot-version=v4.1 MELACASVQASCSLTIPASSTTSRRRSPSLSFYRYSFPNPIISSKLNSNKLSANSFRRRNPSLVAAVDGATTVPSDCNGEKLSFSYSSEPTAINDDGKDG VDDGKMASVCNKLIEVFMVDKPTPNDWRKLLAFSKEWDNLRPHFYKRCQERADCEDDPGKKHNLLRFARKLKEIDEDVQRHNELLGVIKAAPSELTEIVA KRRKDFTKEFFVHLYTVAQSYHDNPSEQNALAKLGNDCVATVQAYDCATENMEALNAAELKLQDIINSPSLDAACKKIDDLAEKNQFDSALVLMITKAWS AAKESNMTKDEVKDILYHLYKTAIGNLQRNVPKDIRILKYLLTVEDPEERLCALNDAFTPGEELEGKDVDSLYTTPEKLHTWIKAMVDAYHLSQDGTLMR EARDLMNPKIIKKMEELKKLVEDHFM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G36320			unknown protein		Potri.002G091000 [exp]	0	1
AT5G62990		EMB1692	embryo defective 1692, Ubiquit...		Potri.002G233900 [exp]	1.73	0.9838
AT1G23180			ARM repeat superfamily protein...		Potri.008G131900 [exp]	2.44	0.9814
AT4G04330		AtRbcX1	homologue of cyanobacterial Rb...		Potri.011G010300 [exp]	3.46	0.9759
AT4G01037		AtWTF1	what's this factor?, Ubiquitin...		Potri.002G169300 [exp]	4.58	0.9773
AT5G38290			Peptidyl-tRNA hydrolase family...		Potri.004G098100 [exp]	5.29	0.9664
AT3G54090		FLN1	fructokinase-like 1 (.1)		Potri.016G109600 [exp]	6.32	0.9749
AT4G18520			Pentatricopeptide repeat (PPR)...		Potri.005G170300 [exp]	6.48	0.9736
AT4G37380			Tetratricopeptide repeat (TPR)...		Potri.007G050200 [exp]	6.92	0.9719
AT5G48470			unknown protein		Potri.002G251400 [exp]	6.92	0.9674
AT1G23400		CAF2, ATCAF2	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.010G042500 [exp]	8.48	0.9739

Compare expression of checked genes

Potri.002G091000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.