Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08550 637 / 0 electron carriers;protein disulfide oxidoreductases (.1) AT3G11920 361 / 4e-115 glutaredoxin-related (.1) AT4G37080 103 / 8e-23 Protein of unknown function, DUF547 (.1.2.3) AT1G16750 103 / 9e-23 Protein of unknown function, DUF547 (.1) AT3G13000 100 / 9e-22 Protein of unknown function, DUF547 (.1.2) AT2G23700 99 / 3e-21 Protein of unknown function, DUF547 (.1) AT5G66600 98 / 6e-21 Protein of unknown function, DUF547 (.1.2.3.4) AT5G42690 82 / 3e-16 Protein of unknown function, DUF547 (.1.2.3) AT5G47380 81 / 1e-15 Protein of unknown function, DUF547 (.1) AT1G21060 75 / 8e-14 Protein of unknown function, DUF547 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G144800 [exp] 420 / 2e-137 AT3G11920 707 / 0.0 glutaredoxin-related (.1) Potri.010G097600 [exp] 413 / 7e-134 AT3G11920 708 / 0.0 glutaredoxin-related (.1) Potri.007G003900 [exp] 100 / 9e-22 AT3G13000 654 / 0.0 Protein of unknown function, DUF547 (.1.2) Potri.006G216800 [exp] 94 / 8e-20 AT3G13000 437 / 1e-147 Protein of unknown function, DUF547 (.1.2) Potri.005G130000 [exp] 94 / 8e-20 AT5G66600 664 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.014G034800 [exp] 93 / 1e-19 AT5G42690 476 / 4e-163 Protein of unknown function, DUF547 (.1.2.3) Potri.007G033100 [exp] 93 / 3e-19 AT5G66600 721 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.004G150000 [exp] 89 / 3e-18 AT5G66600 447 / 2e-150 Protein of unknown function, DUF547 (.1.2.3.4) Potri.007G041100 [exp] 86 / 3e-17 AT4G37080 577 / 0.0 Protein of unknown function, DUF547 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029074 [exp] 401 / 1e-129 AT3G11920 692 / 0.0 glutaredoxin-related (.1) Lus10034196 [exp] 398 / 3e-128 AT3G11920 688 / 0.0 glutaredoxin-related (.1) Lus10012909 [exp] 385 / 6e-124 AT3G11920 659 / 0.0 glutaredoxin-related (.1) Lus10030563 [exp] 352 / 3e-111 AT3G11920 583 / 0.0 glutaredoxin-related (.1) Lus10033328 [exp] 100 / 9e-22 AT3G13000 712 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10016786 [exp] 93 / 2e-19 AT5G66600 666 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10022480 [exp] 91 / 1e-18 AT5G66600 662 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10034787 [exp] 91 / 2e-18 AT3G13000 710 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10037293 [exp] 88 / 9e-18 AT3G13000 663 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10021756 [exp] 86 / 4e-17 AT4G37080 488 / 2e-166 Protein of unknown function, DUF547 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF00462 [poplar] [flax] Glutaredoxin Glutaredoxin CL0123 [poplar] [flax] HTH PF00610 [poplar] [flax] DEP Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) CL0123 [poplar] [flax] PF04784 [poplar] [flax] DUF547 Protein of unknown function, DUF547
Representative CDS sequence Show only first row Show all	>Potri.002G091200.1 pacid=42780116 polypeptide=Potri.002G091200.1.p locus=Potri.002G091200 ID=Potri.002G091200.1.v4.1 annot-version=v4.1 ATGGAAAAAGCAGCAGTTAGTGAGAAAGATATAACTAATTCCCCAACTTCTGAGAAGCATGAGGAAGATGCAACAATTGCTGAAGGTGATAATCAAATGA GAGTTTCAGAGGAGGTGAACTCTCTAGACACAAGAAAGGACAATCCCAAGCTGGACAAGGATAATGCAGAATCTGATGCTGGTGAAAGTATTGATGAGAG CAGTGGCTTAGAGTTTAAATGTCCAGTTGACAATGTTGTGAAACATGATGACTTGGGAAAGGAGTGTGAGAACATGGGTATGGAACCTAAATCTGTTGGA GCAAAGTTAAACAATGATACTCAACGTGTTGTATCTGGTGACAAGATGGATGAAGTTGGTGATTTGGAGCCTAAAGCTGAAGAAGGAAACAAGCAAACAC CAGAGGAAATTCTTGGTGAGCAGAAGGAGCCAGAGCCTGTTTTTGATGGAACAGAGGTTCCTGGGATGGAAGCTAACAGAAGTACATCTTTCCATTCCTC AGATGCTGATCATGAGGCTGAGGGGTCTGCTTGGCCTGAGAAGGCCGTGGCTCTTAAGAACTTTGTCAAGGAGAAGGGTGCAGTTGCTGTCACCAGTGTT CTTCGTGTTCTTTCTGTAAAAAGAGATGAAGTGGAATGGGTTACTGGTGATGAAGATAGGGAGGCTTCAGATTCAGCTAAAGACAAAGAAGTAACAGAAG TTTCTCAGAAACCAGCGGACAGGTCTGCATGGAATCCTCTCAGCTATATTATGTTTTCTCATGATGATGCAGAAAACAAATTTGAGCAGGGGGTGGAAGG AAGTGAAGAGCCACCACAACCTATAGCCATGAAGGGAAGAATTATACTGTACACAAGATTAGGGTGCCAAGACTGTAAAGAGGTTAGGTTATTTTTGCAT AGGAAAAGGCTCAGATATGTTGAGATCAACATTGATGTATACCCAAGTAGAAAGCTGGAACTAGAGAAGTTTACTGGATCTTCTACTGTTCCTAAGGTGT TTTTTAATGAAATTGTAATTGGAGGTTTGACTGAACTCAATGGCTTGGATGAGTCTGGCAAGCTTGGAGAGAAGATTGATTATTTGATTACTGAAGCTCC AGCATCTGAAGCTCCTCTTCCTCCTCTTTCTGGTGAAGATGATGCTTCCACTAGTGGCTCAATCGATGAACTTGCACTTATTGTTCGGAAAATGAAAGAA TCCATTGTTGTTAAGGATCGATTTTATAAGATGCGGAGGTTCACCAACTGCTTTCTAGGTTCAGAGGCTGTAGATTTCTTGTCAGAGGATCAATACTTGG AGAGGGAAGAGGCTACTGAATTTGGGCGAAAGCTTGTTAGCAAACTCTTCTTTCGACACATTCTTGATGAGAACATATTCGAGGATGGTAACCACTTGTA TCGCTTTTTGGACAATGATCCTGTTGTGTCATCTCAATGCTATAATATCCCAAGGGGCATTGTTGAGGCAAAGCCTAAGCCCATAACAGAAATTGCAGCA AGACTCAGATTTTTGTCCTGTGCAATCTTTGAAGCCTTCACATCAGTAGATGGAAAGCATGTTGACTACAGAAGTATTCATGGGAGTGAGGAATTTGCAA GATATTTGCGGATAATTCAGGAGCTCCAACGAGTAGAATTGCTAGATATGCCAAGGGAGGAGAAGCTTGCTTTTTTCATAAATCTCTACAATATGATGGC CATCCATGCTATATTGGTGTTGGGTTTTCCAAAAGGAGCATTGGAAAGAAGGAAGTTGTTTGGAGACTTCCAGTATGTGATAGGTGGGTGCACATACTCT CTTTCAGCTATTCAAAATGGCATTTTAAGGGGCAACCAGCGACCGCCATACAATCTTACCAAGCCATTCGGTGTGAAAGATAAGCGTTCCAAGGTGACTC TTCCCTATGCTGAACCTTTAATCCACTTTGCACTTGTTTGTGGTACCCGATCTGGACCTGCCCTTCGATGCTTCTCACCTGGGGACATTGATAAAGAACT GATGGAGGCTGCCCGTGATTTCTTAAGAGGTGGAGGGCTTATTATTGATCTGAATGCCAAGACTGCATTCGCCAGCAAGATCCTCAAATGGTTTAGCGTG GATTTTGGCAAGAATGAGATGGAGGTGCTCAAGCATGCATCGAACTTCTTGGAGCCAACCTACTCAGAAACTTTGATGGAGTTGCTCGATGGTGCTCAGC TAAAGGTGACGTACCAACCTTATGATTGGGGTTTGAACAATTGA
AA sequence Show only first row Show all	>Potri.002G091200.1 pacid=42780116 polypeptide=Potri.002G091200.1.p locus=Potri.002G091200 ID=Potri.002G091200.1.v4.1 annot-version=v4.1 MEKAAVSEKDITNSPTSEKHEEDATIAEGDNQMRVSEEVNSLDTRKDNPKLDKDNAESDAGESIDESSGLEFKCPVDNVVKHDDLGKECENMGMEPKSVG AKLNNDTQRVVSGDKMDEVGDLEPKAEEGNKQTPEEILGEQKEPEPVFDGTEVPGMEANRSTSFHSSDADHEAEGSAWPEKAVALKNFVKEKGAVAVTSV LRVLSVKRDEVEWVTGDEDREASDSAKDKEVTEVSQKPADRSAWNPLSYIMFSHDDAENKFEQGVEGSEEPPQPIAMKGRIILYTRLGCQDCKEVRLFLH RKRLRYVEINIDVYPSRKLELEKFTGSSTVPKVFFNEIVIGGLTELNGLDESGKLGEKIDYLITEAPASEAPLPPLSGEDDASTSGSIDELALIVRKMKE SIVVKDRFYKMRRFTNCFLGSEAVDFLSEDQYLEREEATEFGRKLVSKLFFRHILDENIFEDGNHLYRFLDNDPVVSSQCYNIPRGIVEAKPKPITEIAA RLRFLSCAIFEAFTSVDGKHVDYRSIHGSEEFARYLRIIQELQRVELLDMPREEKLAFFINLYNMMAIHAILVLGFPKGALERRKLFGDFQYVIGGCTYS LSAIQNGILRGNQRPPYNLTKPFGVKDKRSKVTLPYAEPLIHFALVCGTRSGPALRCFSPGDIDKELMEAARDFLRGGGLIIDLNAKTAFASKILKWFSV DFGKNEMEVLKHASNFLEPTYSETLMELLDGAQLKVTYQPYDWGLNN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08550			electron carriers;protein disu...		Potri.002G091200 [exp]	0	1
AT3G02700			NC domain-containing protein-r...		Potri.017G142300 [exp]	2.00	0.8213
AT3G13200		EMB2769	EMBRYO DEFECTIVE 2769, Cwf15 /...		Potri.001G370366 [exp]	13.78	0.8097
AT2G01650		PUX2	plant UBX domain-containing pr...		Potri.008G133700 [exp]	18.22	0.8116
AT5G48655			RING/U-box superfamily protein...		Potri.003G148300 [exp]	26.83	0.8134
AT1G72330		ALAAT2	alanine aminotransferase 2 (.1...		Potri.003G072600 [exp]	29.39	0.7313
AT5G54585			unknown protein		Potri.011G130400 [exp]	36.22	0.8011
AT1G05340			unknown protein		Potri.016G019201 [exp]	42.74	0.8012
AT3G12400		ELC, ATELC	Ubiquitin-conjugating enzyme/R...		Potri.003G191100 [exp]	48.49	0.7885
AT5G49600			Protein of unknown function, D...		Potri.010G149100 [exp]	54.66	0.7908
AT3G54540		ABCF4, ATGCN4	ATP-binding cassette F4, gener...		Potri.008G003300 [exp]	58.94	0.7819	GCN4.3

Compare expression of checked genes

Potri.002G091200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.