Plant FIBer expression Database

Potri.002G091300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G36310 431 / 1e-149 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023545
[exp]
449 / 8e-158 AT1G36310 450 / 5e-159 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Lus10040430
[exp]
441 / 2e-154 AT1G36310 443 / 3e-156 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF08241 Methyltransf_11 Methyltransferase domain
Representative CDS sequence
>Potri.002G091300.5 pacid=42778083 polypeptide=Potri.002G091300.5.p locus=Potri.002G091300 ID=Potri.002G091300.5.v4.1 annot-version=v4.1
ATGGTCTTTTGCTTTCTGAGATCATATAGATTCACTGAAGCGACCTGGGAGGCCTTCAGTCTACCCAATTTTGTATTTCGTGGGGTCTGCCATCCTGGAA
TTTTTAAACCCATGAGAGGAATCAAAGTAAAGGGCTTGTCTTGTTTGCGTACTCTTGTATCTGATGGAGAATCTCATGTTCAACCCATGCCATTAGTTGA
AGAAGAGACAGGTTCATCGTCAAGTGTACAGTCCACCCCTGAAATAGAAAAGAATTATGTGCATCGTGTTTATGATGCCATTGCACCTCATTTTAGTTCC
ACCAGGTTTGCCAAGTGGCCAAAAGTTGCAACCTTTTTGAACTCCTTGCCCTCAGGATCTCTTGTATTGGATGCAGGATGTGGAAATGGGAAGTACTTGG
GGTTTAATCCGGATTGCACTTTTGTAGGATGTGATATAAGTGGACCACTTATCAAAATTTGTGCAGACAGAGGTCATGAAGTTCTTGTTGCAGATGCAGT
AAATCTTCCTTACCGAACTGGTTTTGGTGACGCGGCAATATCTATAGCAGTGTTACATCACCTGAGTACAGAGAACAGGAGGAAGAGGGCAATAGATGAA
TTAGTCCGAGCTGTCAAAAAGGGTGGTCTGATTCTAATAACTGTGTGGGCTGTAGAACAGGAGGATCGATCATTGGTTACAAAATGGACTCCCCTTAACC
AAAAGTATGTTGATGAGTGGATAGGACCAGGCAGTCCTCGTATTCGAAGCCCTTCATCCATCACACTAGAAAGCATCCCTGAAACCGAGAATAATTCAAA
GGAGCATGAAAAAGATACCGAGAGTCTAAACCACAAGTTCAAGGGAACTGTGCCTTCGACATCTAAAGATGTTAGAAGTGTACAAAATCAACAGGAGTAT
GTTGATGAGTGGATAGGACCAGGTAGTCCTCGTATTCGAAGCCCTTCACCCATCACACTAGAAAGCATCCCTGAAACCGAGAATAATTCGAAGGAGCATG
AAAAAGATACCGAGAGTCTAAACCACGAGTTCAAGGGAACTATGCCTTCAACGTCTAAAGATGATAGCAGTGTACCAAATCAACAGGAGTATTTTGTGCC
TTGGCACTTACCTTACCACCGTGCTGAAGTCAGTGGTGCATCTGCATGTGCTCTTGAAAATGGCCTGGCAAAGAAGGATGATAAAAAAGGTGCTGTGGTA
TATAACAGGTACTACCATGTCTTCAGTGAAGGTGAACTTGAAAGGTTGGTTTCTGGAATGAACAATGCAGTAGTAGTTGATCGATTTTTTGACAAGTCAA
ACTGGTGTATCATTCTTCAGAAAACTTTATGA
AA sequence
>Potri.002G091300.5 pacid=42778083 polypeptide=Potri.002G091300.5.p locus=Potri.002G091300 ID=Potri.002G091300.5.v4.1 annot-version=v4.1
MVFCFLRSYRFTEATWEAFSLPNFVFRGVCHPGIFKPMRGIKVKGLSCLRTLVSDGESHVQPMPLVEEETGSSSSVQSTPEIEKNYVHRVYDAIAPHFSS
TRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGFNPDCTFVGCDISGPLIKICADRGHEVLVADAVNLPYRTGFGDAAISIAVLHHLSTENRRKRAIDE
LVRAVKKGGLILITVWAVEQEDRSLVTKWTPLNQKYVDEWIGPGSPRIRSPSSITLESIPETENNSKEHEKDTESLNHKFKGTVPSTSKDVRSVQNQQEY
VDEWIGPGSPRIRSPSPITLESIPETENNSKEHEKDTESLNHEFKGTMPSTSKDDSSVPNQQEYFVPWHLPYHRAEVSGASACALENGLAKKDDKKGAVV
YNRYYHVFSEGELERLVSGMNNAVVVDRFFDKSNWCIILQKTL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G36310 S-adenosyl-L-methionine-depend... Potri.002G091300
[exp]
0 1
AT1G17130 Family of unknown function (DU... Potri.011G096100
[exp]
1.00 0.9253
AT5G06950 bZIP TGA2, AHBP-1B bZIP transcription factor fami... Potri.006G039000
[exp]
2.82 0.9021
AT3G19910 RING/U-box superfamily protein... Potri.007G073200
[exp]
3.74 0.8813
AT2G19130 S-locus lectin protein kinase ... Potri.019G119200
[exp]
4.24 0.8968
AT1G73730 EIL AtEIL3, ATSLIM,... ARABIDOPSIS THALIANA SULFUR LI... Potri.001G015900
[exp]
4.58 0.8941 Pt-EIL3.2
AT1G10580 Transducin/WD40 repeat-like su... Potri.008G172800
[exp]
6.92 0.8992
AT1G79000 ATHAC1, ATHPCAT... ARABIDOPSIS THALIANA P300/CBP ... Potri.019G036800
[exp]
8.94 0.8972
AT5G45110 ATNPR3, NPR3 NPR1-like protein 3 (.1) Potri.002G056500
[exp]
9.79 0.8892
AT3G52430 PAD4, ATPAD4 ARABIDOPSIS PHYTOALEXIN DEFICI... Potri.007G100600
[exp]
10.48 0.8869
AT4G28910 NINJA novel interactor of JAZ (.1.2.... Potri.018G085100
[exp]
12.00 0.8491

Potri.002G091300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.