Plant FIBer expression Database

Potri.002G091400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G02130 405 / 2e-139 NDP1 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003964
[exp]
483 / 1e-169 AT5G02130 425 / 6e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Lus10024371
[exp]
461 / 6e-161 AT5G02130 400 / 1e-137 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Lus10023783
[exp]
376 / 2e-126 AT5G02130 294 / 2e-94 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Lus10010858
[exp]
357 / 1e-120 AT5G02130 289 / 1e-94 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Lus10000114
[exp]
299 / 2e-99 AT5G02130 241 / 2e-77 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence
>Potri.002G091400.1 pacid=42777479 polypeptide=Potri.002G091400.1.p locus=Potri.002G091400 ID=Potri.002G091400.1.v4.1 annot-version=v4.1
ATGTTGCCCTCTTCACTCAAGTTATCAAGAGTAGCGACGGCCACCGTGGCTCGAACAGCCCGGTTGGGACTCACCTCCATCAAACTATCTTCATCATCGC
CATATAGATTGATCCATGATGGAATCATCAAAAGCCTAAATGCAAACCCAGTTGCTCTTCAAATGATTGACTACGCTCTATCTCTTGCCAAATCTCAAAA
ATCAGATGAATCGCAAGGCCAAGCCATGTTAGTCCTAGAGCAGTGCCTCTCTTCTCAATCTAGTGAAAACCAAGATGTTGTTACCCATAATTCAAAGGGA
ATGGTCCTGCTTGCCATGTCTAGCTTATTATCTGCAAGAGGAAGTTATGATGATGCAATGGAAAAACTGCAAAATATTCAAGATTTAATACACTCTCATT
TGGATGTTAGAGTTGCTGCAATGGAAGCTCTTGTTGGGCTCAATTTGGAGATGGGGAATGATGATACTTCATCAGTGCTCGCAGATAAATGCTTAGAACT
CTTAGGAAAAGTTGAATTAAAAAATAGTGATGAGGGCTCTGAGGTTGCAAGTGCTCGGGCTAAAGCAATCAAAGGGCTAGCTGAGCTTGTCCAAGGCAAT
CTTGAATCAGCTGAACCATTCTTCCAAGGATTTCTGGACAATAAAGGCTGCATTGGAAATGCTGCTTTATCATATGGAGAATTCTTGCATGCCACGAGAA
ACTTTTCACTGGCAAAGGACTTCTACCAGAAGGTTATTCAAGAGGTGGCTAATAAAAAAGACTTTACAGATGTCCGTGCCCTGGCAGCTTGTAATATGGC
TTCAGAGGAAGTTCTGCTTGCAGCTACCTGTGCTTTGGGACAGCTTGAGGTGCACATGGGGAACTTTGGCAATGCAGAAGAGACATTGACTAGTGCACTA
AACAGAGCCGAGCAACTTTTTGGCTCTCGTCATCCCAAGGTTGGTGTAGTTTTAACATGCCTGGCTCTCATGTTCCAGCATAAATCAAAACAAGAGCACT
CAAGTTCTCTTTTAATACAAGAGGGTCTTTATAGAAGGGCAATAGAGTTGCTGAAAGCTCCACCTCTGGACTTAGAAGTTAATAGAACAATGAGAAGTGG
GATGGATATCATTGCTCTTGCAAGAGGTGGCTATGCAGAAACACTTTGCATTCAAGAGAACAGAAAGGGTGAAGGAGAGAAAATGAAAAGGTGGGCAGAG
GCTGCATGGAGAAACCGCAGCTTGTCACTATCTGAGGCTCTGAAAATCTCAGATTCTTCCAACAGAATGCCTGTGGTAGATGCCCGAATTTGCAGAGCTT
TGTAG
AA sequence
>Potri.002G091400.1 pacid=42777479 polypeptide=Potri.002G091400.1.p locus=Potri.002G091400 ID=Potri.002G091400.1.v4.1 annot-version=v4.1
MLPSSLKLSRVATATVARTARLGLTSIKLSSSSPYRLIHDGIIKSLNANPVALQMIDYALSLAKSQKSDESQGQAMLVLEQCLSSQSSENQDVVTHNSKG
MVLLAMSSLLSARGSYDDAMEKLQNIQDLIHSHLDVRVAAMEALVGLNLEMGNDDTSSVLADKCLELLGKVELKNSDEGSEVASARAKAIKGLAELVQGN
LESAEPFFQGFLDNKGCIGNAALSYGEFLHATRNFSLAKDFYQKVIQEVANKKDFTDVRALAACNMASEEVLLAATCALGQLEVHMGNFGNAEETLTSAL
NRAEQLFGSRHPKVGVVLTCLALMFQHKSKQEHSSSLLIQEGLYRRAIELLKAPPLDLEVNRTMRSGMDIIALARGGYAETLCIQENRKGEGEKMKRWAE
AAWRNRSLSLSEALKISDSSNRMPVVDARICRAL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G02130 NDP1 Tetratricopeptide repeat (TPR)... Potri.002G091400
[exp]
0 1
Potri.003G046300
[exp]
8.71 0.7065
AT1G28340 AtRLP4 receptor like protein 4 (.1) Potri.004G047300
[exp]
9.48 0.6466
AT4G19540 INDH, INDL IND1(iron-sulfur protein requi... Potri.002G042600
[exp]
10.09 0.6815
AT1G09800 Pseudouridine synthase family ... Potri.003G008500
[exp]
13.96 0.6918
AT5G37590 Tetratricopeptide repeat (TPR)... Potri.004G085200
[exp]
16.12 0.6329
AT5G26800 unknown protein Potri.005G011800
[exp]
19.69 0.6919
AT1G60080 3'-5'-exoribonuclease family p... Potri.016G055600
[exp]
28.14 0.6513
AT4G16060 unknown protein Potri.010G006000
[exp]
37.68 0.6528
AT4G33100 unknown protein Potri.006G224400
[exp]
38.23 0.6409
AT3G60510 ATP-dependent caseinolytic (Cl... Potri.014G057400
[exp]
38.96 0.6044

Potri.002G091400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.