Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13810 579 / 0 EDTS5, ALD1 eds two suppressor 5, AGD2-like defense response protein 1 (.1) AT4G33680 534 / 0 AGD2 ABERRANT GROWTH AND DEATH 2, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT2G22250 81 / 2e-16 ATAAT, AAT, MEE17 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) AT1G80360 77 / 4e-15 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT5G53970 57 / 1e-08 TAT7 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) AT1G77670 53 / 3e-07 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G72330 52 / 8e-07 ALAAT2 alanine aminotransferase 2 (.1.2.3) AT1G62960 50 / 2e-06 ACS10 ACC synthase 10 (.1) AT1G17290 47 / 2e-05 ALAAT1 alanine aminotransferas (.1) AT4G23600 43 / 0.0003 JR2, CORI3, TAT1 JASMONIC ACID RESPONSIVE 2, CORONATINE INDUCED 1, Tyrosine transaminase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G013200 [exp] 618 / 0 AT2G13810 644 / 0.0 eds two suppressor 5, AGD2-like defense response protein 1 (.1) Potri.005G115800 [exp] 602 / 0 AT2G13810 601 / 0.0 eds two suppressor 5, AGD2-like defense response protein 1 (.1) Potri.009G082100 [exp] 535 / 0 AT4G33680 736 / 0.0 ABERRANT GROWTH AND DEATH 2, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.007G088426 [exp] 85 / 1e-17 AT2G22250 643 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Potri.005G079200 [exp] 84 / 2e-17 AT2G22250 649 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Potri.001G177000 [exp] 68 / 3e-12 AT1G80360 573 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.005G175400 [exp] 63 / 2e-10 AT1G77670 728 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.002G086000 [exp] 60 / 2e-09 AT1G77670 726 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.014G124100 [exp] 56 / 3e-08 AT1G77670 289 / 6e-94 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020959 [exp] 570 / 0 AT2G13810 587 / 0.0 eds two suppressor 5, AGD2-like defense response protein 1 (.1) Lus10035646 [exp] 523 / 0 AT4G33680 723 / 0.0 ABERRANT GROWTH AND DEATH 2, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10010748 [exp] 520 / 0 AT4G33680 724 / 0.0 ABERRANT GROWTH AND DEATH 2, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10032388 [exp] 93 / 4e-20 AT2G22250 681 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Lus10023080 [exp] 90 / 3e-19 AT2G22250 683 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Lus10023117 [exp] 74 / 3e-14 AT1G80360 593 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10011479 [exp] 67 / 8e-12 AT1G80360 497 / 2e-177 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10014710 [exp] 57 / 2e-08 AT1G77670 680 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10004089 [exp] 57 / 2e-08 AT1G77670 685 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10018962 [exp] 54 / 1e-07 AT1G77670 289 / 2e-93 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00155 [poplar] [flax] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Potri.002G091500.1 pacid=42778905 polypeptide=Potri.002G091500.1.p locus=Potri.002G091500 ID=Potri.002G091500.1.v4.1 annot-version=v4.1 ATGAATTATTCTCAAGTGACATCGTGCATTTGCATACCCAAGGCAATTTTATTACAACCTAAAACAAACTGGACCAGTTCGAAGTCCGGCAATGAGAGAA GAGCTGGCCACTGGACACATGTCCCCCGCAATGTTAATATGGAGGGCCTTCGAAGTGGATATTTGTTTCCTGAGATATCCATACGTGAGCATGAACACAT CCAAAAGAACCCAAATGCAAGGTTGATAAGACTTGGAATTGGTGACACCACACAGCCTATACCAGACATCATAACGACGGCGATGGCTGAGCATGCAGAT GCTTTGTCAACTACGCGAGGTTACAGAGGATATGGAGCAGAGCAGGGCAACATGGAATTACGAATGGCTATTGCGGAAACGCTTTACAGAGGTACTGGAG TGAAAGGCAGTGAGATTTTTGTATCTGATGGAGCACAATGTGACATTTCACGTCTTCAGATGCTTCTGGGTTCCAATGTGAAGGTGGCTGTTCAGGACCC TTCTTTTCCGGCTTATATTGATACCAGTGTAATTGTTGGTCAATCCGGCAAGTTGGAAGAGAAAACTGGGAAGTATAGCGACATTGTTTACATGAACTGT GGAGCTGAGAACAATTTTTTCCCTGACCTGTCTACTACTCCAAGGACAGATGTAATATTCTTCTGCTCTCCAAACAATCCAACTGGTAGCGCTGCATCTT GGAAGCAATTAAAGCAACTGGTTGATTTTGCCAAGACAAACGGCTCCATAATAGTTTATGACTCTGCATATGCTGCCTATATATCAGATGAAAGCCCAAG ATCAATCTTTGAAATCCCTGGAGCCAAAGAGGTTGCTATTGAGATCTCATCCTTCTCCAAATTTGCTGGGTTCACTGGCGTCCGCCTCGGTTGGACAGTG GTTCCTGAAGAGTTGAAATACTCCAACGGATTTCCTGTCATAGAAGATTTCAACCGCATTGTATGCACCTGCTTCAATGGCGCTTCAAATATTGTTCAGG CTGGAGGACTAGCATGCCTTTCTAGAGATGGTTATCAGGCTGTGTGCAATGTGGTTGACTACTACAAAGAGAACGCGAAAATACTTGTTGAAGCATTTGC ATCACTTGGATTGAAGGTCTATGGAGGCAAAAATGCCCCTTACGTGTGGGTTCATTTTCCAGGGATGAGTTCATGGAATGTATTCAATGAAATTCTAGAG AAAACACATGTAGTGACAGTTCCAGGTAGAGGATTTGGTCCTGGTGGTGAAGAGTATATCAGAGTTAGTGCATTTAGTCATAGAGAGAATATGATGGAAG CTTCTCTGAGGATGAAAAAATTATTTAGATGA
AA sequence Show only first row Show all	>Potri.002G091500.1 pacid=42778905 polypeptide=Potri.002G091500.1.p locus=Potri.002G091500 ID=Potri.002G091500.1.v4.1 annot-version=v4.1 MNYSQVTSCICIPKAILLQPKTNWTSSKSGNERRAGHWTHVPRNVNMEGLRSGYLFPEISIREHEHIQKNPNARLIRLGIGDTTQPIPDIITTAMAEHAD ALSTTRGYRGYGAEQGNMELRMAIAETLYRGTGVKGSEIFVSDGAQCDISRLQMLLGSNVKVAVQDPSFPAYIDTSVIVGQSGKLEEKTGKYSDIVYMNC GAENNFFPDLSTTPRTDVIFFCSPNNPTGSAASWKQLKQLVDFAKTNGSIIVYDSAYAAYISDESPRSIFEIPGAKEVAIEISSFSKFAGFTGVRLGWTV VPEELKYSNGFPVIEDFNRIVCTCFNGASNIVQAGGLACLSRDGYQAVCNVVDYYKENAKILVEAFASLGLKVYGGKNAPYVWVHFPGMSSWNVFNEILE KTHVVTVPGRGFGPGGEEYIRVSAFSHRENMMEASLRMKKLFR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G13810		EDTS5, ALD1	eds two suppressor 5, AGD2-lik...		Potri.002G091500 [exp]	0	1
AT1G30890			Integral membrane HRF1 family ...		Potri.001G327700 [exp]	3.74	0.9998
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Potri.013G041900 [exp]	11.31	0.9988
AT1G19250		FMO1	flavin-dependent monooxygenase...		Potri.001G335900 [exp]	12.40	0.9997
					Potri.003G010499 [exp]	13.41	0.9997
AT2G15220			Plant basic secretory protein ...		Potri.009G094500 [exp]	15.29	0.9997
					Potri.006G260948 [exp]	15.96	0.9996
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Potri.003G195900 [exp]	16.30	0.9996	NQR.1
AT1G16260			Wall-associated kinase family ...		Potri.003G185688 [exp]	16.43	0.9968
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.003G213700 [exp]	16.49	0.9996
					Potri.018G082700 [exp]	17.66	0.9993

Compare expression of checked genes

Potri.002G091500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.