Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22040 595 / 0 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G55270 157 / 8e-43 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G30090 125 / 2e-31 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G24540 110 / 2e-26 AFR ATTENUATED FAR-RED RESPONSE, Galactose oxidase/kelch repeat superfamily protein (.1) AT1G67480 100 / 1e-22 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT3G27150 91 / 2e-19 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G21950 89 / 4e-19 SKIP6 SKP1 interacting partner 6 (.1) AT3G61350 88 / 1e-18 SKIP4 SKP1 interacting partner 4 (.1) AT1G16250 88 / 1e-18 Galactose oxidase/kelch repeat superfamily protein (.1) AT4G38940 85 / 7e-18 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G170000 [exp] 888 / 0 AT1G22040 592 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G217700 [exp] 168 / 6e-47 AT1G55270 733 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G008000 [exp] 167 / 9e-47 AT1G55270 731 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.006G193800 [exp] 136 / 2e-35 AT1G30090 604 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G104300 [exp] 105 / 1e-24 AT1G67480 473 / 1e-167 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.018G007100 [exp] 99 / 2e-22 AT2G24540 408 / 4e-142 ATTENUATED FAR-RED RESPONSE, Galactose oxidase/kelch repeat superfamily protein (.1) Potri.014G083200 [exp] 98 / 2e-22 AT3G61350 299 / 7e-100 SKP1 interacting partner 4 (.1) Potri.010G004500 [exp] 99 / 3e-22 AT1G16250 551 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.008G176000 [exp] 97 / 1e-21 AT1G67480 487 / 3e-173 Galactose oxidase/kelch repeat superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020960 [exp] 538 / 0 AT1G22040 499 / 7e-175 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10025357 [exp] 533 / 0 AT1G22040 497 / 6e-174 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10001071 [exp] 160 / 5e-44 AT1G55270 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10019425 [exp] 160 / 6e-44 AT1G55270 652 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10042824 [exp] 137 / 1e-35 AT1G30090 578 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10028121 [exp] 133 / 3e-34 AT1G30090 583 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10023608 [exp] 108 / 2e-25 AT1G26930 353 / 9e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10017821 [exp] 104 / 6e-24 AT3G61350 328 / 3e-110 SKP1 interacting partner 4 (.1) Lus10022061 [exp] 100 / 5e-23 AT3G63220 476 / 7e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10036735 [exp] 97 / 2e-21 AT2G02870 570 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF01344 [poplar] [flax] Kelch_1 Kelch motif CL0271 [poplar] [flax] F-box PF12937 [poplar] [flax] F-box-like F-box-like
Representative CDS sequence Show only first row Show all	>Potri.002G091900.2 pacid=42779045 polypeptide=Potri.002G091900.2.p locus=Potri.002G091900 ID=Potri.002G091900.2.v4.1 annot-version=v4.1 ATGGGGGGTGTTTTGAGTTTAGCTAGTCCCAAATGCAGAACAAGCGACTATAATGAGGTGTTAAATAATGGAAGCTGCAAGAGGCAAAAGACATCCTCAA TTTTTTATGATGAGGAAAGCCCAAGATTGATTCCATTTCTTCCTGATGAGTTATCAATCCAGATTCTTGCTAGAATCCCCAGATGTTGCTACTTTAATCT GAGTTTGGTGTCACGCAAGTGGAAGGAAATGTTTGAGAGTGCTGAGCTGTTCAAAGTTAGAAAAGATTTTGGATTAACAGAAGAATGGCTGTATGTACTG ATAAAGGATAAAGCAGATAAATTATCATGGCACGCTTTGGATCCATTGTCAAGAAATTGGCAGAGATTGCCTCCAATGCCAAATGTTGTTTGCACAGACA AATCTAAAAGGGGACTTTCTGGGTTTTGGTTGTGGAATGTAGTTGGGCCAGGCATAAAAATTGCTGAAGTCATAAGGAGTTGGCTTGGGCAAAAGGATAC GCTGGATCAAATGCCATTTGGTGGTTGTTCCATTGGTGCTGTTGATGGATGCCTCTATGTGCTTGGTGGGTTCTCTGGAGCTACCACCGTGAGATGTGTC TGGCGGTTCGATCCAATCTCAAACAAATGGAGCAAAATGGCTTCCATGTCTACGGGTAGAGCTTACTGTAAGACGAGCATTTTAAATAACAAGCTATATG TTGTTGGGGGGGTTAGTCAGGGCCAAGGGAGATTGACTCCTCTTCAATCCGCTGAAGTTTTTGACCCATGCAAGGGTACATGGTCTGATGTCCCAAGCAT GCCATTCTCAAGAGCTCAATTAGTGCCCACTGCCTATTTGTCTGACATGCTAAAGCCTATTGCCACCGGGATGACTTCCTACATGGGAAGATTATTCGTG CCTCAGAGTTTATACTCATGGCCCTTCATTGTTGATGTTGGTGGGGAAATATATGATCCTGAAACAAATTCATGGGCTGAAATGCCAACTGGCATGGGAG AAGGTTGGCCTGCACGGCAGGCAGGTACGAAATTGAGCGTGGTCGTAGATGGTGAATTATATGCATTTGATCCGTCTACTTCTGCAGACAGTGGTAAGAT CAAGGTATATGATCACAAAGAAGATACATGGAAAGTTGTCATTGGGAAAGTCCCTGTTGCTGATTTTACAGAATCCGAATCTCCATATCTGCTCACAGGT TTTCATGGAAAGATTCATGTCCTCACAAAAGACGCCAATCAGAACATTGCAGTTATGCAGGCTGACGTGCAAGATGTTTTGGGTTCCCCATTGAACTCAA CTTCTGTTTCTGCTCAGTCCTTGCATGAGCATTCTGACTCATCGGAAACAGTTGTTTGGAAGGTCATAGCCAGTAAAGATTTTGGGTCTGCTGAACTTGT AAGTTGTCAGGTTCTTGATGTATAG
AA sequence Show only first row Show all	>Potri.002G091900.2 pacid=42779045 polypeptide=Potri.002G091900.2.p locus=Potri.002G091900 ID=Potri.002G091900.2.v4.1 annot-version=v4.1 MGGVLSLASPKCRTSDYNEVLNNGSCKRQKTSSIFYDEESPRLIPFLPDELSIQILARIPRCCYFNLSLVSRKWKEMFESAELFKVRKDFGLTEEWLYVL IKDKADKLSWHALDPLSRNWQRLPPMPNVVCTDKSKRGLSGFWLWNVVGPGIKIAEVIRSWLGQKDTLDQMPFGGCSIGAVDGCLYVLGGFSGATTVRCV WRFDPISNKWSKMASMSTGRAYCKTSILNNKLYVVGGVSQGQGRLTPLQSAEVFDPCKGTWSDVPSMPFSRAQLVPTAYLSDMLKPIATGMTSYMGRLFV PQSLYSWPFIVDVGGEIYDPETNSWAEMPTGMGEGWPARQAGTKLSVVVDGELYAFDPSTSADSGKIKVYDHKEDTWKVVIGKVPVADFTESESPYLLTG FHGKIHVLTKDANQNIAVMQADVQDVLGSPLNSTSVSAQSLHEHSDSSETVVWKVIASKDFGSAELVSCQVLDV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22040			Galactose oxidase/kelch repeat...		Potri.002G091900 [exp]	0	1
AT3G19080			SWIB complex BAF60b domain-con...		Potri.005G134500 [exp]	1.00	0.8038
AT4G38690			PLC-like phosphodiesterases su...		Potri.004G172000 [exp]	6.00	0.6932
AT5G15790			RING/U-box superfamily protein...		Potri.003G161600 [exp]	9.48	0.7411
AT4G31860			Protein phosphatase 2C family ...		Potri.003G183800 [exp]	10.48	0.6887
AT5G49610			F-box family protein (.1)		Potri.007G027300 [exp]	10.95	0.6585
AT1G26665			Mediator complex, subunit Med1...		Potri.001G083801 [exp]	13.56	0.6369
AT1G15740			Leucine-rich repeat family pro...		Potri.006G061700 [exp]	18.00	0.6999
AT1G56220			Dormancy/auxin associated fami...		Potri.013G014900 [exp]	18.97	0.6883
AT4G12350	MYB	ATMYB42	myb domain protein 42 (.1)		Potri.001G118800 [exp]	19.39	0.7071
AT5G62200			Embryo-specific protein 3, (AT...		Potri.015G132700 [exp]	21.35	0.7072

Compare expression of checked genes

Potri.002G091900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.