Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22110 131 / 1e-36 structural constituent of ribosome (.1) AT1G77932 86 / 5e-21 Protein of unknown function (DUF3049) (.1) AT1G54740 44 / 5e-05 Protein of unknown function (DUF3049) (.1) AT5G22390 41 / 0.0003 Protein of unknown function (DUF3049) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G166900 [exp] 308 / 2e-105 AT1G22110 141 / 5e-40 structural constituent of ribosome (.1) Potri.005G169900 [exp] 127 / 1e-34 AT1G22110 93 / 1e-21 structural constituent of ribosome (.1) Potri.009G162800 [exp] 54 / 3e-08 AT5G22390 74 / 8e-16 Protein of unknown function (DUF3049) (.1) Potri.005G037600 [exp] 50 / 3e-07 AT1G54740 104 / 7e-26 Protein of unknown function (DUF3049) (.1) Potri.013G027100 [exp] 49 / 9e-07 AT1G54740 103 / 1e-25 Protein of unknown function (DUF3049) (.1) Potri.010G091800 [exp] 48 / 2e-06 AT5G19260 104 / 8e-26 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Potri.005G209100 [exp] 44 / 7e-05 AT1G03170 89 / 8e-21 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) Potri.004G201500 [exp] 42 / 0.0002 AT5G22390 72 / 4e-15 Protein of unknown function (DUF3049) (.1) Potri.009G016600 [exp] 42 / 0.0002 AT5G22090 195 / 4e-56 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020626 [exp] 53 / 6e-08 AT5G22390 96 / 4e-24 Protein of unknown function (DUF3049) (.1) Lus10004863 [exp] 50 / 5e-07 AT5G22390 97 / 9e-25 Protein of unknown function (DUF3049) (.1) Lus10013353 [exp] 47 / 1e-05 AT5G22090 199 / 8e-58 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Lus10000655 [exp] 45 / 3e-05 AT5G19260 81 / 7e-18 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10004098 [exp] 45 / 4e-05 AT5G22090 200 / 3e-58 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Lus10035353 [exp] 41 / 0.0005 AT1G54740 93 / 1e-21 Protein of unknown function (DUF3049) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11250 [poplar] [flax] FAF Fantastic Four meristem regulator
Representative CDS sequence Show only first row Show all	>Potri.002G092000.1 pacid=42777387 polypeptide=Potri.002G092000.1.p locus=Potri.002G092000 ID=Potri.002G092000.1.v4.1 annot-version=v4.1 ATGAACATGGCTTCCAACGTTTCATCACCATCATCTTCAACTATCGTTGGTGAGTACATTGGTATAGAGAGCTGTCTTGATCTTAAGAACGAAGAAGATA TCTTCACATCCTCATCAAATAAAGAAGAGACTAATTATGAGAGTTGTAGTCAACGTTGTCATCGCGAAAAGAGAGAGCAACGGTGGGCTAAGAAAAAGGA GTTTCCACCACCAATACCATTGTTGGCTCGTACGGAGAATTTGCCTTCCCATATGCCTTGGGTTTTAAAGAGGTACTATACAAGTGATGGAAGACTGATA CTTAGAGAAGAGAAGGTCAGGCGTCATGAGTACTTTCGGGCTCACAGATCCAATGGACGTCTCACCTTGCATCTTGTTCCTTTGGATGATGAAGTTTCGG CCACTCTTTTTGTTGGTGATGAGAGACGTCATGACATTGAGAATGATATTGATCAGTGCTATGATAATGAAGATGATGGTGAAGAAGAGCAAGTACTCGA GCAAGAACATGAAGAAGATAAGGAAGAAAATGAAAGCCTTGTAGAAGAAAGTATTGATGTGAAAGTAAATGACAATGATGGTGTAGAAAATGATTATTTT GGTAATAATGTTGATAGTGGTGAAACTATAGAGGTGGAGGAGGAGGAGGCTGTGCATGATGATCAAAGAGTTCCTTCTATGGAGAGTTCTGAGAGTGCAG GCAAATGCTTGAACTACATCAGTGTGAGAACAAGCTCCACTTGTATATTTGGGGTGCCAGTACCGGCTATAAGGCCAGTTTATACATAA
AA sequence Show only first row Show all	>Potri.002G092000.1 pacid=42777387 polypeptide=Potri.002G092000.1.p locus=Potri.002G092000 ID=Potri.002G092000.1.v4.1 annot-version=v4.1 MNMASNVSSPSSSTIVGEYIGIESCLDLKNEEDIFTSSSNKEETNYESCSQRCHREKREQRWAKKKEFPPPIPLLARTENLPSHMPWVLKRYYTSDGRLI LREEKVRRHEYFRAHRSNGRLTLHLVPLDDEVSATLFVGDERRHDIENDIDQCYDNEDDGEEEQVLEQEHEEDKEENESLVEESIDVKVNDNDGVENDYF GNNVDSGETIEVEEEEAVHDDQRVPSMESSESAGKCLNYISVRTSSTCIFGVPVPAIRPVYT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22110			structural constituent of ribo...		Potri.002G092000 [exp]	0	1
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Potri.008G064000 [exp]	3.00	0.8512	LAC2.1,LAC2
AT1G70140		ATFH8	formin 8 (.1)		Potri.008G192900 [exp]	5.29	0.8381
					Potri.003G098301 [exp]	6.00	0.8360
					Potri.013G099450 [exp]	6.92	0.8326
					Potri.003G026106 [exp]	8.77	0.8135
AT1G20270			2-oxoglutarate (2OG) and Fe(II...		Potri.002G016700 [exp]	9.21	0.8340
AT3G03210			unknown protein		Potri.004G080600 [exp]	10.58	0.8287
AT5G05450			P-loop containing nucleoside t...		Potri.010G184132 [exp]	10.72	0.7922
AT1G74960		ATKAS2, KAS2, F...	ARABIDOPSIS BETA-KETOACYL-ACP ...		Potri.018G062900 [exp]	12.96	0.7813
					Potri.001G276904 [exp]	15.00	0.8071

Compare expression of checked genes

Potri.002G092000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.