Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22130 313 / 2e-105 MADS AGL104 AGAMOUS-like 104 (.1) AT1G77980 290 / 1e-96 MADS AGL66 AGAMOUS-like 66 (.1) AT1G77950 226 / 1e-72 MADS AGL67 AGAMOUS-like 67 (.1.2) AT1G18750 103 / 1e-24 MADS AGL65, AGL102 AGAMOUS-like 65 (.1.2) AT4G09960 98 / 7e-24 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT2G42830 96 / 1e-22 MADS AGL5, SHP2 SHATTERPROOF 2, AGAMOUS-like 5, K-box region and MADS-box transcription factor family protein (.1.2) AT3G58780 95 / 1e-22 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3) AT4G18960 95 / 2e-22 MADS AG AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) AT1G69540 96 / 4e-22 MADS AGL94 AGAMOUS-like 94 (.1) AT2G45650 94 / 4e-22 MADS AGL6 AGAMOUS-like 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G087500 [exp] 249 / 2e-80 AT1G22130 229 / 9e-73 AGAMOUS-like 104 (.1) Potri.019G077200 [exp] 98 / 1e-23 AT4G09960 274 / 5e-94 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.007G120002 [exp] 94 / 1e-23 AT1G77980 97 / 1e-25 AGAMOUS-like 66 (.1) Potri.001G058200 [exp] 96 / 3e-23 AT2G03710 156 / 3e-48 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.013G104900 [exp] 96 / 4e-23 AT4G09960 330 / 3e-116 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.011G075800 [exp] 96 / 7e-23 AT4G18960 325 / 2e-113 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.008G088200 [exp] 99 / 1e-22 AT2G03060 297 / 4e-98 AGAMOUS-like 30 (.1.2) Potri.010G167300 [exp] 98 / 1e-22 AT2G03060 259 / 4e-83 AGAMOUS-like 30 (.1.2) Potri.004G064300 [exp] 95 / 2e-22 AT4G18960 313 / 8e-109 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022506 [exp] 243 / 1e-77 AT1G22130 277 / 1e-91 AGAMOUS-like 104 (.1) Lus10016810 [exp] 216 / 7e-68 AT1G22130 239 / 5e-77 AGAMOUS-like 104 (.1) Lus10024823 [exp] 129 / 9e-35 AT1G22130 142 / 3e-40 AGAMOUS-like 104 (.1) Lus10018714 [exp] 114 / 2e-29 AT1G22130 122 / 7e-33 AGAMOUS-like 104 (.1) Lus10019089 [exp] 116 / 3e-29 AT1G18750 279 / 3e-91 AGAMOUS-like 65 (.1.2) Lus10034464 [exp] 113 / 3e-27 AT1G18750 281 / 1e-88 AGAMOUS-like 65 (.1.2) Lus10026613 [exp] 103 / 2e-24 AT2G03060 308 / 2e-102 AGAMOUS-like 30 (.1.2) Lus10009481 [exp] 99 / 2e-23 AT4G09960 274 / 1e-92 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10005302 [exp] 98 / 2e-23 AT4G09960 330 / 2e-115 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10008264 [exp] 98 / 4e-23 AT4G09960 328 / 3e-114 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [poplar] [flax] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Potri.002G092300.2 pacid=42777911 polypeptide=Potri.002G092300.2.p locus=Potri.002G092300 ID=Potri.002G092300.2.v4.1 annot-version=v4.1 ATGGGTCGTGTTAAGCTGGAGATCAAGAGAATAGAAAACAACACCAATCGACAGGTTACGTTTTCAAAACGAAGGAATGGACTCATTAAGAAGGCATATG AGCTTTCCGTCCTTTGTGACATTGATATTGCTCTTATCATGTTCTCTCCCTCTGGCCGTCTTAGTCACTTTTCTGGCAAAAAGAGGATTGAGGATGTGCT AGCTCGTCTCGTTAATCTCCCTGACCAAGAAAGACAACTTGCTATAGTTTTTCCTGAACAAGGCCAACATCAACGTTTCTCTTGTTGCAGTGATATTCAG AACAAAGAGTATTTGTTTAGGACACTACAACAGCTTAGGAACGAGAGTGATATCGCCCTTCAACTTTCCAACCCAACAGCAATTAACTCGGAGGAACTCC AGCATGAAATTGCAAGGTTACTGCAGCGACTTCAACTAGCAGAGGAACAGATAAGGATATATGAGCCAGACCCGATAAAATTCACGTCCATGGGGGAGCT AGAATCATGCGACAAACGTCTTGTTGACACCCTATCACGTGTCATGCAAAGAAAGGAATATCTCCTGAGCAACCATCTATCTTCATTTAATCCATCAAGA CTAGAGCATGGGTTGCCAACCAGCTCTTTCAATAATGATATGGTAAATTGGTTGCCTGATGCTGGTAGCGACCATGCCGAAATCTTGCACCATGGAGCTC ACAACCACGCCCAAATCTTCAATGCTTCTACTCCCCTGAACGCTTTAAGGAATCTTTCATCCACAATGTATGATTCATTGTTGCAAGGAAGTCACTCAAA TGCAGAGGCACACAACTTCAGGGAGTGGCCTGGTGATGGAAACTTTCCACAGTGGCCACCATATAATTCAACGGTGCTCCACTCCAACCCCATGTCACCT TCCTTATACTCTCAAATTCAGCATGAAATGGTGGGACCAAATATTCCAGATATGATGCCACGTGAGCAGGTGGAGATTCCAATCAGCAGCCCCCATCTAC AGGTGGAAAATGATGGCGCAAGCTATGAGGACAACAAAGTACCTCGACTTGATGATCAAGAGCACCAGACAATCTTCGAATTGTAA
AA sequence Show only first row Show all	>Potri.002G092300.2 pacid=42777911 polypeptide=Potri.002G092300.2.p locus=Potri.002G092300 ID=Potri.002G092300.2.v4.1 annot-version=v4.1 MGRVKLEIKRIENNTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSGRLSHFSGKKRIEDVLARLVNLPDQERQLAIVFPEQGQHQRFSCCSDIQ NKEYLFRTLQQLRNESDIALQLSNPTAINSEELQHEIARLLQRLQLAEEQIRIYEPDPIKFTSMGELESCDKRLVDTLSRVMQRKEYLLSNHLSSFNPSR LEHGLPTSSFNNDMVNWLPDAGSDHAEILHHGAHNHAQIFNASTPLNALRNLSSTMYDSLLQGSHSNAEAHNFREWPGDGNFPQWPPYNSTVLHSNPMSP SLYSQIQHEMVGPNIPDMMPREQVEIPISSPHLQVENDGASYEDNKVPRLDDQEHQTIFEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Potri.002G092300 [exp]	0	1
AT5G28780			PIF1 helicase (.1)		Potri.003G004501 [exp]	4.79	0.6827
					Potri.012G100750 [exp]	10.72	0.6827
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Potri.012G114900 [exp]	12.00	0.6696
AT4G09960	MADS	AGL11, STK	SEEDSTICK, AGAMOUS-like 11, K-...		Potri.013G104900 [exp]	13.22	0.6525	AGL11.2
AT1G43760			DNAse I-like superfamily prote...		Potri.010G033133 [exp]	18.00	0.6150
AT1G43760			DNAse I-like superfamily prote...		Potri.003G047001 [exp]	20.00	0.5634
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Potri.015G091600 [exp]	23.32	0.5033	PtrLHT1
					Potri.007G065950 [exp]	23.45	0.5605
AT3G30180		CYP85A2, BR6OX2	brassinosteroid-6-oxidase 2 (....		Potri.010G156800 [exp]	24.49	0.5040
					Potri.009G102600 [exp]	50.41	0.4238

Compare expression of checked genes

Potri.002G092300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.