Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78010 688 / 0 tRNA modification GTPase, putative (.1) AT3G12080 76 / 3e-14 EMB2738 embryo defective 2738, GTP-binding family protein (.1.2) AT5G39960 64 / 1e-10 GTP binding;GTP binding (.1) AT5G66470 52 / 5e-07 RNA binding;GTP binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G054200 [exp] 74 / 1e-13 AT3G12080 813 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Potri.004G230600 [exp] 60 / 2e-09 AT5G39960 787 / 0.0 GTP binding;GTP binding (.1) Potri.007G021900 [exp] 56 / 3e-08 AT5G66470 535 / 0.0 RNA binding;GTP binding (.1) Potri.001G160800 [exp] 48 / 1e-05 AT1G30960 491 / 4e-173 GTP-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006309 [exp] 735 / 0 AT1G78010 669 / 0.0 tRNA modification GTPase, putative (.1) Lus10029578 [exp] 733 / 0 AT1G78010 677 / 0.0 tRNA modification GTPase, putative (.1) Lus10027371 [exp] 72 / 8e-13 AT3G12080 874 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Lus10002557 [exp] 72 / 1e-12 AT3G12080 869 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Lus10014634 [exp] 61 / 1e-09 AT5G39960 634 / 0.0 GTP binding;GTP binding (.1) Lus10014289 [exp] 52 / 1e-06 AT5G66470 587 / 0.0 RNA binding;GTP binding (.1) Lus10025995 [exp] 49 / 1e-05 AT5G66460 577 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01926 [poplar] [flax] MMR_HSR1 50S ribosome-binding GTPase CL0289 [poplar] [flax] FBD PF10396 [poplar] [flax] TrmE_N GTP-binding protein TrmE N-terminus CL0289 [poplar] [flax] PF12631 [poplar] [flax] MnmE_helical MnmE helical domain
Representative CDS sequence Show only first row Show all	>Potri.002G092600.1 pacid=42779023 polypeptide=Potri.002G092600.1.p locus=Potri.002G092600 ID=Potri.002G092600.1.v4.1 annot-version=v4.1 ATGGCTCTTCTCCCTGTATTTCGCACTATCATCACCCATTTCTTCAAACCTAAAACCCTAAACCCTTCCCTCTCACCACTCTTCCAAGAACCTACTGTTA AAAATCTTTCCTTTCTCGCCAAGCACAAAACCCTTCCGAAACCCCATGCCTCTCTCAATTCAAAAACCACTTTACTTCTCAATGGTCAAGACCAGCGCTT TATGGGCCTAAATGGTACTGACGACAAGTCGATATCTACCACTATTGCAGCCATTGTAACCTCCGTGGGTGGCCCACCTGCTTCCGTGGGGATTGTCAGG TTATCTGGTCCATCTGCCGTCGAGATTGCTGCACGTGTGTTTAAACCAATGAGAAAAAAGAAGAAAAAAGGATTTTGTGTGTGGAAGCCTACCAGTCATG TCGTAGATTACGGGGTGGTTTTGGATCATCAAGGGAATGTAGTTGATGAGGTTTTAGCTGTACCCATGTTGGCTCCAAGGTCTTACACTAGAGAAGATGT GGTTGAGCTTCAGTGTCACGGGACTGAAGTCTGTCTTCGTCGTGTGCTGAGAGCTTGTATAGAAGCTGGAGCCAGGCTTGCAGAACCAGGTGAGTTCACT CTACGTGCATTTCTAAATGGCCGGCTGGACCTTTCGCAAGCTGAAAATGTTGGAAAGCTTATATCATCCAAATCCGTGGCTGCTGCAGATGCAGCCCTCG CTGGAATTCAGGGAGGCTTTGCTTCTTTGGTCAAATCACTAAGAACGCAATGCATTGAGCTGCTTACTGAGATTGAAGCTCGTTTAGACTTTGATGATGA GATGCCGCCACTAGATTTGAATTTAATCATGGATAAAATACATTCCATGTCAGAAAATGTGGAGAATGCACTCAAGACAGCCAATTACGACAAGCTTTTG CAATCTGGATTACAGATAGCAATTGTTGGCCGTCCTAATGTTGGGAAGTCCAGCCTCCTTAACGCATGGAGCAAAAGTGAGCGGGCAATAGTTACAGAAA TTGCTGGAACCACCCGTGACATTGTTGAAGCCAGTATTACAGTTGGTGGCATCCCTGTGATCCTTCTTGATACTGCTGGGATCAGGGTGACTGATGATGT TGTCGAGAAGATTGGTGTAGAAAGATCTGAAGCAGTTGCCCTGGGTGCTGATGTCATTGTTATGACAGTTAGTGCTCTTGATGGATGGACACCAGAAGAC ACCGAACTTTTGAATAGGATTGTATCTAAGAAGAAATCAGTTGGCTCTTTTACACCAATGATCCTTGTAGTTAACAAAATAGACTGTTCTCTGTCCTTGT GTTCGGAATGGGTTGATAGGGGTGGTGGTTCTTTTAGTAAGCATGTTTTCACCTGTGCTATTACTGGTCAAGGAATTCAAGATTTAGAGATGGCAATTTC AGAGATTGTGGGTCTTAACAAAATTCCTGCGGGGGGACTCAAATGGACTGTCAACCATAGACAATGTGAACAGCTTGTGCGGATGAAGGAGGCTCTTGTA AGGTTGAAATCTTCAATTGAGGAGGAAATGCCCCTGGATTTTTGGACTATTGATTTGAGGGATGCTGCATTGGCTCTCGGACAGATAAGTGGAGAAAACA TCTCTGAAGAGATTTTGTCAAACATTTTTGGTAAATTCTGTATCGGTAAATAG
AA sequence Show only first row Show all	>Potri.002G092600.1 pacid=42779023 polypeptide=Potri.002G092600.1.p locus=Potri.002G092600 ID=Potri.002G092600.1.v4.1 annot-version=v4.1 MALLPVFRTIITHFFKPKTLNPSLSPLFQEPTVKNLSFLAKHKTLPKPHASLNSKTTLLLNGQDQRFMGLNGTDDKSISTTIAAIVTSVGGPPASVGIVR LSGPSAVEIAARVFKPMRKKKKKGFCVWKPTSHVVDYGVVLDHQGNVVDEVLAVPMLAPRSYTREDVVELQCHGTEVCLRRVLRACIEAGARLAEPGEFT LRAFLNGRLDLSQAENVGKLISSKSVAAADAALAGIQGGFASLVKSLRTQCIELLTEIEARLDFDDEMPPLDLNLIMDKIHSMSENVENALKTANYDKLL QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDIVEASITVGGIPVILLDTAGIRVTDDVVEKIGVERSEAVALGADVIVMTVSALDGWTPED TELLNRIVSKKKSVGSFTPMILVVNKIDCSLSLCSEWVDRGGGSFSKHVFTCAITGQGIQDLEMAISEIVGLNKIPAGGLKWTVNHRQCEQLVRMKEALV RLKSSIEEEMPLDFWTIDLRDAALALGQISGENISEEILSNIFGKFCIGK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78010			tRNA modification GTPase, puta...		Potri.002G092600 [exp]	0	1
AT4G17300		ATNS1, NS1, OVA...	ovule abortion 8, Class II ami...		Potri.007G129800 [exp]	4.00	0.9490
AT2G17033			pentatricopeptide (PPR) repeat...		Potri.009G139300 [exp]	5.19	0.9279
AT5G62650			Tic22-like family protein (.1)		Potri.004G072100 [exp]	9.79	0.9060
AT5G10690			pentatricopeptide (PPR) repeat...		Potri.006G273400 [exp]	9.94	0.9099
AT1G50450			Saccharopine dehydrogenase (....		Potri.009G050100 [exp]	11.13	0.9340
AT1G19720			Pentatricopeptide repeat (PPR-...		Potri.002G030200 [exp]	12.00	0.8837
AT3G26115			Pyridoxal-5'-phosphate-depende...		Potri.010G051200 [exp]	13.85	0.8958
AT1G30680			toprim domain-containing prote...		Potri.001G461200 [exp]	17.32	0.8791
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Potri.017G124500 [exp]	26.98	0.8809
AT1G76050			Pseudouridine synthase family ...		Potri.002G016800 [exp]	27.54	0.8838

Compare expression of checked genes

Potri.002G092600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.