Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30100 1639 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G19120 1464 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G16800 314 / 4e-87 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G15570 239 / 2e-65 MAA3 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G65810 182 / 2e-46 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G37030 177 / 5e-46 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G52090 177 / 5e-46 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37150 177 / 4e-45 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37160 170 / 6e-43 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37140 167 / 1e-42 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G168300 [exp] 2442 / 0 AT4G30100 1620 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G253700 [exp] 296 / 2e-81 AT1G16800 1405 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.017G056700 [exp] 253 / 3e-70 AT4G15570 1058 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.017G140501 [exp] 189 / 3e-48 AT1G65780 798 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G077600 [exp] 187 / 4e-48 AT1G65810 843 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G143450 [exp] 189 / 5e-48 AT1G65810 694 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G143000 [exp] 189 / 5e-48 AT1G65810 680 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G140300 [exp] 186 / 5e-48 AT1G65780 572 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G077500 [exp] 187 / 6e-48 AT1G65810 827 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033462 [exp] 1707 / 0 AT4G30100 1589 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10020914 [exp] 963 / 0 AT4G30100 903 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035717 [exp] 326 / 9e-91 AT1G16800 1196 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037303 [exp] 322 / 1e-89 AT1G16800 1190 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015030 [exp] 245 / 1e-67 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038906 [exp] 244 / 5e-67 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10003960 [exp] 216 / 1e-57 AT4G15570 938 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035775 [exp] 199 / 3e-52 AT5G37150 561 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035774 [exp] 195 / 9e-51 AT1G65810 541 / 7e-180 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10037353 [exp] 196 / 1e-50 AT1G65810 543 / 2e-177 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF13087 [poplar] [flax] AAA_12 AAA domain CL0023 [poplar] [flax] P-loop_NTPase PF13245 [poplar] [flax] AAA_19 AAA domain
Representative CDS sequence Show only first row Show all	>Potri.002G093500.4 pacid=42778042 polypeptide=Potri.002G093500.4.p locus=Potri.002G093500 ID=Potri.002G093500.4.v4.1 annot-version=v4.1 ATGGGTTCTCGAGGAAGGCTAGTATTTGATCTCAATGAACCCCCAGCTGAGGATGATGAGGAGACCGATCATGTTGTATGCTTGCAGCCACACAAGGCAC TTCCTTCTGCAAATCCCCACCATTCTGACTTATTTGTAGCATCAATGGACCCCAAAGGATTAAACAATAATCATGCCTTTTCACATGCATCATCTGTATC TGGTTTTCAGCCTTTTGTTCGACCCAAGGTTGCTTATGGCCCTGAAATGGGTTTTGAAAAGAAGATGGCCGAGGAACAGAATCTCAAGTTTGCATCACCA GCAAAAACAATTACTGAAGATGATAAGAAAGAAGCACCATCTCTAGTTTCTGGTTCTGCAGACATTAAGGCCGTTGAAAGAGAAGAAGGTGAGTGGTCTG ATGCAGAGGGCTCTGCTGATGCATGTGCTGGCAGTAGTATGTGTCAACAGGGCAAAGCTTCTCAAGATCAAGTAAAGTCTGAATTAGAAGGCTGTACTTC TGGTGCAGTTTCCATGAATGTTTCTAGCAGTGTTAAGGTTATTGATAATGCCAATGCTGAAAGCAGTGGCCATGTTTCACCTGGACTGGATCAAGGTCAG AATGATCATAAAAGTAACAATAGTCGAAATTCAAATGACAATGCAAATGGTGATGTATCAACGGATGGTCAGGAAGAAATTGCCTCAGTCTCAAAACAAT GTGAAGTTAGAGGTATGGAAGCAAGCCATGCACTTAAGTCTTCAAATAATCTGGGAAAGAGGAAGATAGACCAACACAAAGAAGCAATGCTGGGTAAAAA GCGTAATAGACAGACCATGTTGATTAATATAGATGAAGCCAAGCAAGCTGGAAGCATGAAAAGTTCAACACCAAGAAGGCAGCCAACTGTCACTCGTTCT GTAAAGGAAGTTCATAATGGTCCTCCACCTGCTGAACGTGTTGGAGAAAGGCCTAGCCATCCTATAATTAAGGATCAGAAACAAGCTGATCTGCTATGTA ATGGTGGCGGCAATTCTGTGGAGTCTTGTCTACACAAATCTGAATGTACTGGCAATGTAAATTCCGTACAACCAGCTAAGAATAGGAAAGTGAATGGCGA CTCTGATTTTTCTGTAGACTCACCCCTGCCACCTCTCCCAAAACAGAATTCATGGAGACAGCCTGCCGAGAGTTCATGGAAGCATCCTGCTGATTTAAGG CAGCCAAAAAATTCACAATTCTCTAACAGGAAGCCTGCTCTTACCAGCCAAAGTTCCATGGATTCAAAGTTGGGAAACAAGAAATACCTTCCTGTGAAAA AGCCAACTGTAGCCAGTACCCCCTATCAGGACACATCAGTGGAGCGTCTCATACGGGAGGTGACTAATGAGAAGTTTTGGCATCACCCAGAGGACTCTGA GCTCCAATGTGTTCCTGGTCACTTTGAGTCTGTGGAAGAATATGTAAAAGTATTTGAGCCTTTGCTTTTTGAGGAATGCCGAGCACAACTTTACAGCACC TGGGAGGATTCAGCTGAAACCAATGCACACGTTATGGTTCGTATAAAGAGCATTGAAAGGCGGGAAAGAGGATGGTATGATGTCATCGTTCTTCCAGTAA ATGAGTGCAAGTGGACATTCAAGGAGGGTGATGTTGCAGTTCTTTCTACTCGAAGGGCTAGAATAGTAAGATCCAAGAGAAACAACTCCTCATCATCAAA TGAAGATGAAGAAGAGCCTGAGATCAGTGGACATGTGGCTGGCACTGTTAGAAGACACATCCCTTTGGATTCTCGTGATCCTCCTGGTGCAATCCTTCAC TTTTATGAAGGGGACTCCTATGATCCTCACAGAAAGGTTGACGAGGATCATATTTTGAGGAAATTTCAACCCAGAGGCACCTGGTATTTGACTGTCCTTG GTTCGCTTGCAACCACCCAGCGGGAGTATGTTGCTTTGCATGCATTTTGCCGTCTTAATTTACAGATGCAAACTGCAATCCTAAAGCCCAGTCCAGATCA CTTCCCAAAATATGAGCAGCAGACCCCAGCCATGCCTGAATGCTTTACACAGAATTTTGTTGACCATTTGCGTAGGACATTCAATGGACCCCAGCTGGCT GCAATCCAGTGGGCTGCAATGCATACTGCTGCTGGTACAAGTAGTGGGGTAACTAAGAGGCAAGAGCCGTGGCCCTTTACTCTTGTACAAGGGCCTCCAG GGACAGGAAAGACACATACAGTCTGGGGAATGCTAAATGTCATCCATCTGGTTCAGTATCAGCATTACTATACCTCTTTGCTTAAGAAACTGGCACCACA GAGTTATAAGCATGCCAATGAAAGCAATCCTGACAATATTGCTATGGGGTCAATTGATGAAGTTCTTCATAACATGGACCAGAATCTCTTCCGCTCCCTT TCGAAACTCTGTCCAAAGCCCAGAATGTTAGTCTGTGCTCCTTCTAATGCTGCAACTGATGAACTTCTTGCACGTGTTCTTGATCGTGGATTTATTGATG GTGAGATGAAAGTTTACAGGCCTGATGTGGCCAGAGTTGGGGTTGATTCACAATCACGTGCTGCTCAGGCAGTTTCTGTTGAGCGGAGAACTGAACAACT TCTAATCAAGAGCCGCGAAGAAATTTCAAAATGGATGCAAGATTTAAGAGTTCAGGAAGCTTATTTCTCGGCACACATCGCTGACCTTCAAAATAAGCTT AATGTTGCAGCAGTGGACGGTCGTTCCCAAGGATCTGTTGGTGTTGATCCTGATATTCTCATGGCTAGGGACCAAAACCGAGATGCATTACTTCAGAACC TTGCAGCTGCTGTTGAAAGCAGGGATAAAGTTCTAGTTGAGATCTCTCGTCTTCTCATTTTAGAACCCAGATTTCGTGCTGGTAGCAATTTTAATCTGGA AGAAGCCCGTGCTAGTCTCGAGGCAAGTTTTGCCAATGAGGCTGAGATTGTTTTCACTACTGTCTCAAGCAGTGGTCGCAAGTTGTTCTCTCGGCTCACT CATGGTTTTGATATGGTAGTTATTGACGAGGCAGCTCAAGCCAGCGAAGTAGCTGTTCTTCCTCCTCTCGCACTTGGTGCTGCAAGGTGCGTTCTTGTTG GCGATCCTCAGCAGCTTCCTGCAACAGTTATCAGTAAGGCAGCTGGAACCTTGTTATACAGTAGAAGTCTTTTCGAAAGGTTTCAGCAAGCAGGGTGCCC AACAATGTTATTATCTGTACAATATAGGATGCATCCTCAAATACGAGATTTCCCTTCACGGTACTTTTACCAAGGACGTCTCACTGACAGTGAAAGTGTT GCTAATTTACCTGATGAAACATACTACAAGGACCCTTTACTTAGACCTTATCTGTTCTATGATGTTACTCATGGGCGGGAGTCACACAGAGGTGGATCAG TATCTTATCAGAACGTTCATGAAGCACAATTTTGTCTTCAGTTGTATGAGCATCTTCAGAAATCTTTAAAATCCTTGGGCATGGGAAGAATCTCGGTTGG CATAATAACTCCATATAAGTTGCAGTTGAAATGCCTCCAGCAAGAGTTTTTAGCTGTTTTAAAGTCTGAAGAAGGGAAAGATATCTATATTAATACCGTC GATGCTTTCCAAGGCCAGGAGCGTGATGTCATTATTATGTCTTGTGTACGGGCCTCAAGTCACGGTGTTGGCTTTGTTGCTGATATCCGCCGAATGAATG TTGCTCTTACCCGTGCCAGAAGGGCTCTATGGGTCATGGGGAATGCCAATTCTCTTGTGCAATCGGATGACTGGGCTGCATTAATTTCTGATGCTAAAGC AAGAAACTGTTATATGAATATGGACTCCCTCCCCAAAGACTTTTTAGTTTCAAAAGGAGTACTGGGGAAAGGTTCTTCCAATGTAAGGGGTTTGAAGTTA GGGGGACCAAGACACAGATCATTTGATAAGCACATGGATTCCAAATCAAGGATGCCATCAGAGGATGATGAGAATTCAGGTGCATCTGTAATTTCCAGGA ATGGGAGTTACAGGCCTTTTAAGCCAGCAATGGACAGTTCGTTTGATGAATTTGATCAATCAGGTGATAAATCAAGAGATGCCTGGCAATATGGTATACA GAAGAAGCAGGGTTCATCAGCAATCGTAGGAAAGAGGGACTCATAG
AA sequence Show only first row Show all	>Potri.002G093500.4 pacid=42778042 polypeptide=Potri.002G093500.4.p locus=Potri.002G093500 ID=Potri.002G093500.4.v4.1 annot-version=v4.1 MGSRGRLVFDLNEPPAEDDEETDHVVCLQPHKALPSANPHHSDLFVASMDPKGLNNNHAFSHASSVSGFQPFVRPKVAYGPEMGFEKKMAEEQNLKFASP AKTITEDDKKEAPSLVSGSADIKAVEREEGEWSDAEGSADACAGSSMCQQGKASQDQVKSELEGCTSGAVSMNVSSSVKVIDNANAESSGHVSPGLDQGQ NDHKSNNSRNSNDNANGDVSTDGQEEIASVSKQCEVRGMEASHALKSSNNLGKRKIDQHKEAMLGKKRNRQTMLINIDEAKQAGSMKSSTPRRQPTVTRS VKEVHNGPPPAERVGERPSHPIIKDQKQADLLCNGGGNSVESCLHKSECTGNVNSVQPAKNRKVNGDSDFSVDSPLPPLPKQNSWRQPAESSWKHPADLR QPKNSQFSNRKPALTSQSSMDSKLGNKKYLPVKKPTVASTPYQDTSVERLIREVTNEKFWHHPEDSELQCVPGHFESVEEYVKVFEPLLFEECRAQLYST WEDSAETNAHVMVRIKSIERRERGWYDVIVLPVNECKWTFKEGDVAVLSTRRARIVRSKRNNSSSSNEDEEEPEISGHVAGTVRRHIPLDSRDPPGAILH FYEGDSYDPHRKVDEDHILRKFQPRGTWYLTVLGSLATTQREYVALHAFCRLNLQMQTAILKPSPDHFPKYEQQTPAMPECFTQNFVDHLRRTFNGPQLA AIQWAAMHTAAGTSSGVTKRQEPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYTSLLKKLAPQSYKHANESNPDNIAMGSIDEVLHNMDQNLFRSL SKLCPKPRMLVCAPSNAATDELLARVLDRGFIDGEMKVYRPDVARVGVDSQSRAAQAVSVERRTEQLLIKSREEISKWMQDLRVQEAYFSAHIADLQNKL NVAAVDGRSQGSVGVDPDILMARDQNRDALLQNLAAAVESRDKVLVEISRLLILEPRFRAGSNFNLEEARASLEASFANEAEIVFTTVSSSGRKLFSRLT HGFDMVVIDEAAQASEVAVLPPLALGAARCVLVGDPQQLPATVISKAAGTLLYSRSLFERFQQAGCPTMLLSVQYRMHPQIRDFPSRYFYQGRLTDSESV ANLPDETYYKDPLLRPYLFYDVTHGRESHRGGSVSYQNVHEAQFCLQLYEHLQKSLKSLGMGRISVGIITPYKLQLKCLQQEFLAVLKSEEGKDIYINTV DAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNANSLVQSDDWAALISDAKARNCYMNMDSLPKDFLVSKGVLGKGSSNVRGLKL GGPRHRSFDKHMDSKSRMPSEDDENSGASVISRNGSYRPFKPAMDSSFDEFDQSGDKSRDAWQYGIQKKQGSSAIVGKRDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30100			P-loop containing nucleoside t...		Potri.002G093500 [exp]	0	1
AT4G38200			SEC7-like guanine nucleotide e...		Potri.009G169800 [exp]	2.23	0.8633
AT5G53450		ORG1	OBP3-responsive gene 1 (.1.2)		Potri.015G016300 [exp]	3.46	0.8368
AT1G04140			Transducin family protein / WD...		Potri.002G254700 [exp]	8.12	0.7814
					Potri.001G076050 [exp]	10.09	0.8734
AT5G42220			Ubiquitin-like superfamily pro...		Potri.005G247900 [exp]	12.24	0.8147
AT2G25760			Protein kinase family protein ...		Potri.018G046400 [exp]	13.26	0.8481
					Potri.002G261500 [exp]	13.96	0.8319
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Potri.010G006300 [exp]	17.77	0.7768
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.004G017900 [exp]	19.44	0.8587
AT2G35050			Protein kinase superfamily pro...		Potri.003G110000 [exp]	27.56	0.8003

Compare expression of checked genes

Potri.002G093500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.