Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78060 1077 / 0 Glycosyl hydrolase family protein (.1) AT3G19620 775 / 0 Glycosyl hydrolase family protein (.1) AT5G10560 760 / 0 Glycosyl hydrolase family protein (.1) AT5G64570 742 / 0 ATBXL4, XYL4 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) AT5G09730 729 / 0 ATBXL3, XYL3, BXL3, ATBX3 beta-xylosidase 3 (.1) AT1G02640 724 / 0 ATBXL2, BXL2 beta-xylosidase 2 (.1) AT5G49360 701 / 0 ATBXL1, BXL1 beta-xylosidase 1 (.1) AT5G09700 414 / 1e-136 Glycosyl hydrolase family protein (.1) AT3G47000 146 / 1e-36 Glycosyl hydrolase family protein (.1) AT3G47040 139 / 2e-34 Glycosyl hydrolase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G168500 [exp] 1302 / 0 AT1G78060 1069 / 0.0 Glycosyl hydrolase family protein (.1) Potri.002G093900 [exp] 1154 / 0 AT1G78060 1069 / 0.0 Glycosyl hydrolase family protein (.1) Potri.005G168400 [exp] 1023 / 0 AT1G78060 981 / 0.0 Glycosyl hydrolase family protein (.1) Potri.001G089100 [exp] 754 / 0 AT5G10560 988 / 0.0 Glycosyl hydrolase family protein (.1) Potri.014G122200 [exp] 747 / 0 AT1G02640 1154 / 0.0 beta-xylosidase 2 (.1) Potri.001G206800 [exp] 746 / 0 AT5G64570 1168 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) Potri.002G197200 [exp] 746 / 0 AT1G02640 1189 / 0.0 beta-xylosidase 2 (.1) Potri.010G141400 [exp] 745 / 0 AT5G49360 1113 / 0.0 beta-xylosidase 1 (.1) Potri.003G022900 [exp] 728 / 0 AT5G64570 1138 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022374 [exp] 1180 / 0 AT1G78060 1065 / 0.0 Glycosyl hydrolase family protein (.1) Lus10019099 [exp] 1033 / 0 AT1G78060 1007 / 0.0 Glycosyl hydrolase family protein (.1) Lus10007775 [exp] 817 / 0 AT1G78060 725 / 0.0 Glycosyl hydrolase family protein (.1) Lus10004271 [exp] 731 / 0 AT5G10560 989 / 0.0 Glycosyl hydrolase family protein (.1) Lus10010015 [exp] 721 / 0 AT1G02640 1148 / 0.0 beta-xylosidase 2 (.1) Lus10020966 [exp] 709 / 0 AT5G64570 1181 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) Lus10016858 [exp] 599 / 0 AT5G49360 922 / 0.0 beta-xylosidase 1 (.1) Lus10019240 [exp] 276 / 1e-83 AT5G10560 407 / 1e-133 Glycosyl hydrolase family protein (.1) Lus10037728 [exp] 136 / 4e-37 AT5G49360 177 / 1e-52 beta-xylosidase 1 (.1) Lus10043457 [exp] 135 / 1e-32 AT5G20950 809 / 0.0 Glycosyl hydrolase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00933 [poplar] [flax] Glyco_hydro_3 Glycosyl hydrolase family 3 N terminal domain CL0058 [poplar] [flax] PF01915 [poplar] [flax] Glyco_hydro_3_C Glycosyl hydrolase family 3 C-terminal domain CL0159 [poplar] [flax] E-set PF14310 [poplar] [flax] Fn3-like Fibronectin type III-like domain
Representative CDS sequence Show only first row Show all	>Potri.002G094000.1 pacid=42776963 polypeptide=Potri.002G094000.1.p locus=Potri.002G094000 ID=Potri.002G094000.1.v4.1 annot-version=v4.1 ATGAGACCGAAAAAACTCTGTTTCTTCACCTTTACCTTCTTCACTTTATCTGTCCTCCGAGTTGAGTCAACTCAGCCACCATTCTCGTGCGACTCGTCAA ACCCATCAACAAAGGCCTTCCCTTTTTGTGAAACCACATTGCCCATCAGCCAAAGAGCCAGGGACCTGGTCTCTAGGCTCACGTTGGATGAAAAGATTTC TCAACTCGTCAACTCAGCTCCACCAATTCCAAGACTCGGTATCCCGGGTTATGAGTGGTGGTCCGAGGCATTACATGGCGTTTCCAATGCAGGGCCCGGC ATTCATTTCAACGATAATATTAAAGGCGCCACTAGTTTCCCTCAAGTCATCCTCACTGCTGCTTCTTTTGATGCCTACCAATGGTATCGCATTGGTCAGG CGATCGGAAAAGAGGCTAGAGCACTGTACAACGCAGGGCAAGCTACAGGTATGACATTCTGGGCACCAAATATTAACATTTTTAGGGACCCGAGATGGGG GAGAGGACAAGAGACACCCGGGGAGGATCCATTGGTGACAGGGTTATATGCAGCATCATATGTGAAAGGGGTTCAAGGGGATTCCTTTGAAGGAGGAAAG ATTAAAGGGCATCTTCAAGCCTCAGCTTGTTGCAAGCATTTTACTGCTTACGATTTGGATAATTGGAAAGGCATGAATCGCTTCGTGTTTGATGCTCGCG TGACCATGCAAGATTTAGCAGACACGTATCAACCACCATTCAAAAGTTGTGTTGAACAGGGGAGAGCCAGTGGGATAATGTGTGCTTACAATAAAGTTAA CGGAGTCCCTAGCTGTGCCGACTCCAATCTCCTGTCCAAAACTGCTAGAGCGCAATGGGGTTTTCGTGGGTATATCACATCAGACTGTGATGCTGTTTCC ATCATCCATGATGATCAAGGATATGCTAAATCACCCGAAGATGCTGTGGTTGATGTGCTTAAAGCTGGCATGGATGTCAACTGCGGATCATACTTGCTGA AACATGCCAAAGTGGCAGTGGAACAGAAAAAACTGTCTGAATCCGATATTGACAAGGCCCTTCATAACCTCTTTTCTGTAAGGATGAGGCTAGGCCTTTT CAATGGACGTCCTGAAGGCCAGCTTTTTGGAAACATTGGTCCCGACCAAGTTTGCTCCCAAGAACACCAGATACTAGCTCTTGAAGCTGCCCGTAATGGC ATTGTCCTTTTAAAGAACTCTGCAAGACTCCTCCCACTTTCGAAATCCAAAACCAAGTCTCTGGCTGTTATTGGCCCTAATGCCAATTCTGGGCAAATGC TTCTTGGAAACTATGCAGGCCCTCCATGCAGATTTGTGACCCCGCTGCAAGCATTGCAGAGCTACATTAAACAAACTGTTTATCACCCCGCTTGTGATAC AGTTCAATGCTCTTCAGCTTCAGTTGACAGGGCAGTGGATGTAGCAAAAGGAGCAGATAATGTAGTATTGATGATGGGTCTGGACCAAACTCAGGAGAGG GAAGAGCTTGATCGCACTGATTTGTTGCTTCCAGGGAAGCAACAGGAACTCATCATCGCTGTTGCAAAAGCAGCCAAAAATCCAGTTGTTCTAGTGCTTT TTTCTGGAGGTCCTGTTGACATTTCTTTTGCCAAGAATGATAAAAACATTGGAAGCATTTTGTGGGCTGGTTATCCTGGTGAGGGTGGTGCCATTGCCCT TGCAGAAATCGTGTTTGGTGATCATAATCCAGGAGGGAGATTACCAATGACTTGGTATCCACAAGAATTTGTGAAAGTTCCAATGACAGACATGGGGATG CGACCTGAAGCCTCTTCAGGCTATCCTGGCCGTACATACAGGTTCTACAGAGGCCGAAGTGTTTTTGAGTTTGGTTATGGCATCAGCTACTCAAAATATT CTTATGAACTAACAGCTGTCTCCCAAAACACACTCTACTTAAATCAGTCGTCAACAATGCATATAATCAACGACTTCGACTCAGTTCGTTCCACATTGAT TTCTGAGTTGGGCACGGAGTTCTGTGAGCAAAACAAATGCCGTGCAAGAATTGGAGTGAAGAACCATGGAGAGATGGCAGGCAAGCATCCAGTTTTACTA TTTGCGAGGCAGGAAAAACATGGAAATGGTAGGCCAAGGAAACAGCTGATCGGATTCCAAAGTGTGGTATTAGGTGCAGGGGAAAGAGCTGAAATTGAAT TTGAAGTGAGCCCTTGTGAACACCTTAGTAGAGCTAATGAAGATGGCCTGATGGTGATGGAAGAAGGAAGACATTTCTTGGTTGTAGATGGTGACGAGTA CCCAATTTCCGTTGTAATTTGA
AA sequence Show only first row Show all	>Potri.002G094000.1 pacid=42776963 polypeptide=Potri.002G094000.1.p locus=Potri.002G094000 ID=Potri.002G094000.1.v4.1 annot-version=v4.1 MRPKKLCFFTFTFFTLSVLRVESTQPPFSCDSSNPSTKAFPFCETTLPISQRARDLVSRLTLDEKISQLVNSAPPIPRLGIPGYEWWSEALHGVSNAGPG IHFNDNIKGATSFPQVILTAASFDAYQWYRIGQAIGKEARALYNAGQATGMTFWAPNINIFRDPRWGRGQETPGEDPLVTGLYAASYVKGVQGDSFEGGK IKGHLQASACCKHFTAYDLDNWKGMNRFVFDARVTMQDLADTYQPPFKSCVEQGRASGIMCAYNKVNGVPSCADSNLLSKTARAQWGFRGYITSDCDAVS IIHDDQGYAKSPEDAVVDVLKAGMDVNCGSYLLKHAKVAVEQKKLSESDIDKALHNLFSVRMRLGLFNGRPEGQLFGNIGPDQVCSQEHQILALEAARNG IVLLKNSARLLPLSKSKTKSLAVIGPNANSGQMLLGNYAGPPCRFVTPLQALQSYIKQTVYHPACDTVQCSSASVDRAVDVAKGADNVVLMMGLDQTQER EELDRTDLLLPGKQQELIIAVAKAAKNPVVLVLFSGGPVDISFAKNDKNIGSILWAGYPGEGGAIALAEIVFGDHNPGGRLPMTWYPQEFVKVPMTDMGM RPEASSGYPGRTYRFYRGRSVFEFGYGISYSKYSYELTAVSQNTLYLNQSSTMHIINDFDSVRSTLISELGTEFCEQNKCRARIGVKNHGEMAGKHPVLL FARQEKHGNGRPRKQLIGFQSVVLGAGERAEIEFEVSPCEHLSRANEDGLMVMEEGRHFLVVDGDEYPISVVI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78060			Glycosyl hydrolase family prot...		Potri.002G094000 [exp]	0	1
AT5G50150			Protein of Unknown Function (D...		Potri.015G080300 [exp]	2.00	0.8930
AT2G05790			O-Glycosyl hydrolases family 1...		Potri.014G158400 [exp]	3.16	0.8935
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Potri.003G183300 [exp]	4.24	0.8721
AT4G23820			Pectin lyase-like superfamily ...		Potri.003G139100 [exp]	6.92	0.8595
AT2G35470			unknown protein		Potri.003G095500 [exp]	7.48	0.8314
AT4G30020			PA-domain containing subtilase...		Potri.018G143400 [exp]	8.48	0.8307
AT4G14420			HR-like lesion-inducing protei...		Potri.005G222200 [exp]	10.24	0.8354
AT3G13275			unknown protein		Potri.007G107500 [exp]	10.48	0.8457
AT5G50570	SBP	SPL13, SPL13A	SQUAMOSA PROMOTER-BINDING PROT...		Potri.015G098900 [exp]	12.24	0.7288
AT1G63850			BTB/POZ domain-containing prot...		Potri.001G100900 [exp]	13.78	0.8189

Compare expression of checked genes

Potri.002G094000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.