Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78070 655 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT1G36070 620 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G56190 534 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G13340 511 / 3e-180 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G55680 510 / 1e-179 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 60 / 2e-09 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 58 / 9e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 58 / 1e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 56 / 2e-08 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 54 / 2e-07 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G168600 [exp] 848 / 0 AT1G78070 649 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G000500 [exp] 518 / 0 AT3G13340 683 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.011G168600 [exp] 516 / 0 AT3G13340 736 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G233700 [exp] 512 / 2e-180 AT3G13340 597 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G471800 [exp] 509 / 2e-179 AT3G13340 736 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.014G147400 [exp] 505 / 9e-178 AT3G13340 605 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.016G000800 [exp] 164 / 8e-49 AT5G56190 201 / 8e-64 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.014G147500 [exp] 115 / 2e-30 AT3G13340 124 / 2e-34 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.018G020200 [exp] 62 / 4e-10 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041102 [exp] 704 / 0 AT1G78070 622 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10036428 [exp] 684 / 0 AT1G78070 598 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10037252 [exp] 520 / 0 AT1G55680 685 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10035667 [exp] 520 / 0 AT1G55680 684 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021975 [exp] 506 / 4e-178 AT5G56190 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10041268 [exp] 499 / 3e-175 AT3G13340 605 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10004167 [exp] 61 / 1e-09 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10021059 [exp] 60 / 3e-09 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10041007 [exp] 59 / 5e-09 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10011224 [exp] 59 / 6e-09 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.002G094100.2 pacid=42780042 polypeptide=Potri.002G094100.2.p locus=Potri.002G094100 ID=Potri.002G094100.2.v4.1 annot-version=v4.1 ATGCAAACATCGTATAATCAGTTATATACCAAATTGCAAAGTTGCTGGAGACCGACCTTTGTATTTCTTAAAAGGATAATGGATCACTTCCAAAACAACG ATCTCGAGTACGTAGTTGATGATCCTTTTGGAGACGATTTATTCAGAGAAGACGAGCCTCAAAGAAACGACGATTTGGATGACGCTGTGGACTCCGAATT TGAAGATGACTTCGAATCGAGTAAGCCACAGACTGATACATCTGCTTTAGAGGCAAGAAACGGCAAGGATATACAGGGAATACCCTGGGAGAGGCTTAAT TTTACTAGAGATAAGTATCGTGAGACGCGTTTAAAGCAGTATAAGAATTACGAGAACCTCTCGCTTCCTCGCTTCGAGCTTGATAAGGAATGCTTGGAAG TAGAGAAGGGACAGACTTTTTATGACTTTCAGTACAACACAAGGCTTGTCAAATCCACAATCGTTCATTTTCAGCTGAGGAATCTGCTCTGGGCAACATC GAAACATGATGTGTATCTTATGCAAAATTACTCAGTTATGCATTGGTCATCACTACTGCGGCATGGCAAAGAAGTACTCAATGTGGCTAAACCAATTGCT CCGACCTGGCAACGCCCAGGATTGTTGTCTAAGTCACTCTCCAGAGTGCAGATAAGCACTATGGCTGTTAAAGAGAACTTGATGGTGGCAGGCGGCTTCC AAGGAGAACTTATTTGCATGTATTTGAATCAACCTGGAGTTGCATTCTGCACAAAAATAACAACAGGTGAAAATGCCATAACCAATGCAGTGGATGTATA TCATAACCACAATGGCTCAATGAGGATTATGGTTGCCAATAACGATGCTCAAGTCAGAGTATTTGATGCTGAAACGTTTGCTTCGCTGAATACTTTCTCC TTTAATTGGTCTGTAAATAACACCTCTGTTAGCCCAGATGGTAAGCTGCTTGCAGTGCTTGGGGACAGTGCTGAATGCTTGATTGCCGATGCCAATTCAG GGAAAGTGACCGGCAGCCTCAAAGGGCATTTGGATTATTCCTTTGCATCTGCCTGGCACTCTAACGGACAGGTTTTGGCCACTGGAAACCAAGACACTAC GTGCAGGCTGTGGGATATAAGGAATCTGACCCAGTCCCTTGCAGTATTAAAAGGGAATATGGGGGCAATAAGAGGTCTAAAGTTCTCCTCAGATGGTCGC TTTTTGGCAATGGCTGAGCCTGCGGACTTCGTTCATGTTTTTGATACACAATCTGATTACGTCAAATGCCAGGAGATAGATATATTTGGGGAGATTGCTG GCATTTCTTTCAGCCCCGATACTGAAGCTCTTTTTGTTGGTATTGCTGACCGTACTTACGGTAGCTTGTTAGAGTTCAACAGGAGGCATTGTAATTTTTA TTTGGACTCGATATTCTAG
AA sequence Show only first row Show all	>Potri.002G094100.2 pacid=42780042 polypeptide=Potri.002G094100.2.p locus=Potri.002G094100 ID=Potri.002G094100.2.v4.1 annot-version=v4.1 MQTSYNQLYTKLQSCWRPTFVFLKRIMDHFQNNDLEYVVDDPFGDDLFREDEPQRNDDLDDAVDSEFEDDFESSKPQTDTSALEARNGKDIQGIPWERLN FTRDKYRETRLKQYKNYENLSLPRFELDKECLEVEKGQTFYDFQYNTRLVKSTIVHFQLRNLLWATSKHDVYLMQNYSVMHWSSLLRHGKEVLNVAKPIA PTWQRPGLLSKSLSRVQISTMAVKENLMVAGGFQGELICMYLNQPGVAFCTKITTGENAITNAVDVYHNHNGSMRIMVANNDAQVRVFDAETFASLNTFS FNWSVNNTSVSPDGKLLAVLGDSAECLIADANSGKVTGSLKGHLDYSFASAWHSNGQVLATGNQDTTCRLWDIRNLTQSLAVLKGNMGAIRGLKFSSDGR FLAMAEPADFVHVFDTQSDYVKCQEIDIFGEIAGISFSPDTEALFVGIADRTYGSLLEFNRRHCNFYLDSIF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78070			Transducin/WD40 repeat-like su...		Potri.002G094100 [exp]	0	1
AT5G04250			Cysteine proteinases superfami...		Potri.010G225400 [exp]	2.44	0.7796
AT5G02220			unknown protein		Potri.008G057600 [exp]	3.46	0.7830
					Potri.001G443150 [exp]	4.47	0.7751
AT4G24970			Histidine kinase-, DNA gyrase ...		Potri.015G100900 [exp]	4.58	0.7727
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Potri.018G130800 [exp]	5.09	0.7409
AT1G05860			unknown protein		Potri.010G180200 [exp]	10.39	0.7852
AT3G03310		ATLCAT3	ARABIDOPSIS LECITHIN:CHOLESTER...		Potri.008G076300 [exp]	14.07	0.7258
AT5G45290			RING/U-box superfamily protein...		Potri.006G190500 [exp]	15.00	0.7206
AT5G27240			DNAJ heat shock N-terminal dom...		Potri.005G043200 [exp]	19.13	0.7738
AT2G35510		SRO1	similar to RCD one 1 (.1)		Potri.002G112300 [exp]	19.74	0.7749

Compare expression of checked genes

Potri.002G094100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.